Detail information of Os10g0488800_circ_g.8


General Information
CircRNA Name Os10g0488800_circ_g.8
ID in PlantcircBase osa_circ_007221
Alias NA
Organism Oryza sativa
Position chr10: 18538040-18538589  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0488800
Parent gene annotation Myosin head, motor region domain containing protein. (Os10t04888
00-01);Similar to Myosin head family protein, expressed. (Os10t0
488800-02)
Parent gene strand +
Alternative splicing Os10g0488800_circ_igg.1 Os10g0488800_circ_igg.2 Os10g0488800_circ_g.1 Os10g0488800_circ_g.2 Os10g0488800_circ_g.3 Os10g0488800_circ_g.4 Os10g0488800_circ_g.5 Os10g0488800_circ_g.6 Os10g0488800_circ_g.7
Support reads 2
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0488800-02:3
Os10t0488800-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTTCCTTGCTATCTTTAAGGCATTCGTGGTTGTCTTGTTCGAAGATGTGCTGGCAATGTTGAT
CTATTGAATGTGCTAAGAGAATTCGAATCAAAGAAGattggcaaacttgaagacactcggaacc
gtactctgcatggtattttaagggttcaaagctgtttcagagggcatcaagcccgtcgccatgc
aagggaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTGGCAAACTTGAAGACACTCGGAACCGTACTCTGCATGGTATTTTAAGGGTTCAAAGCTGTT
TCAGAGGGCATCAAGCCCGTCGCCATGCAAGGGAACGAATAAGAGGAGTTTTGGCTCTTCAATC
ATGTACTTCCAAACTATTACAATTATATGTTGTATCTGTTCCATTTTCTTGTTGCTATAACTTC
TCTCTCAGCTTACAATTCACCCTTCTTATCTTGTAGTTATTCGAGGTGAGAATGCAAGAAAAAT
GTATTCGTCTCTGGCAAGGAAACACAGGGCAGCCATTATTTTACAGAGAAATCTAAAATGCTGG
CTTGCAAGAAGATATTTCGTTAACATACGGAAGGCTTCAGTAGTAATACAATCTGGTAAGAAGA
TCCTTGACATCGTCATTTAGAACTTCACATGGGACTATGGAAGTGGTAATCTGGATTACTGATT
ATGGTTCCTTGCTATCTTTAAGGCATTCGTGGTTGTCTTGTTCGAAGATGTGCTGGCAATGTTG
ATCTATTGAATGTGCTAAGAGAATTCGAATCAAAGAAG
Conservation Information
Conserved circRNAs osi_circ_008549
PMCS 0.184128182
Functional Information
Coding potential Y
Potential coding position 18538295-18538586(+)
Potential amino acid sequence MYSSLARKHRAAIILQRNLKCWLARRYFVNIRKASVVIQSGIRGCLVRRCAGNVDLLNVLREFE
SKKIGKLEDTRNRTLHGILRVQSCFRGHQARRHARERIRGVLALQSFIRGENARKMYSSLARKH
RAAIILQRNLKCWLARRYFVNIRKASVVIQSGIRGCLVRRCAGNVDLLNVLREFESKKIGKLED
TRNRTLHGILRVQSCFRGHQARRHARERIRGVLALQSFIRGENARKMYSSLARKHRAAIILQRN
LKCWLARRYFVNIRKASVVIQSGIRGCLVRRCAGNVDLLNVLREFESKKIGKLEDTRNRTLHGI
LRVQSCFRGHQARRHARERIRGVLALQSFIRGENARKMYSSLARKHRAAIILQRNLKCWLARRY
FVNIRKASVVIQSGIRGCLVRRCAGNVDLLNVLREFESKK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017