Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os10g0488800_circ_g.6 |
ID in PlantcircBase | osa_circ_007219 |
Alias | NA |
Organism | Oryza sativa |
Position | chr10: 18536852-18537811 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os10g0488800 |
Parent gene annotation |
Myosin head, motor region domain containing protein. (Os10t04888 00-01);Similar to Myosin head family protein, expressed. (Os10t0 488800-02) |
Parent gene strand | + |
Alternative splicing | Os10g0488800_circ_igg.1 Os10g0488800_circ_igg.2 Os10g0488800_circ_g.1 Os10g0488800_circ_g.2 Os10g0488800_circ_g.3 Os10g0488800_circ_g.4 Os10g0488800_circ_g.5 Os10g0488800_circ_g.7 Os10g0488800_circ_g.8 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os10t0488800-01:4 Os10t0488800-02:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.323406693 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
18537147-18537808(+) 18537679-18536876(+) |
Potential amino acid sequence |
MDSIQFLAKCKSSLPQMFASKMLSQSDNPLPVPYRNSAADSQKLSVAMKFKGQLFQLMQRLEST TPHFIRCIKPNNLQLPAIYEQGLVLQQLKCCGVLEVVRISRSGYPTRMTHQKFARRYGFLLLED VASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQKPLGLLSLLDEESTFPNATDLTFANKL KQHLNNNSCFRGERGKAFAVRHYAGEVAYDTSGFLEKNRDLLHMDSIQFLAKCKSSLPQMFASK MLSQSDNPLPVPYRNSAADSQKLSVAMKFKGQLFQLMQRLESTTPHFIRCIKPNNLQLPAIYEQ GLVLQQLKCCGVLEVVRISRSGYPTRMTHQKFARRYGFLLLEDVASQDPLSVSVAILHQFNILP EMYQVGYTKLFFRTGQKPLGLLSLLDEESTFPNATDLTFANKLKQHLNNNSCFRGERGKAFAVR HYAGEVAYDTSGFLEKNRDLLHMDSIQFLAKCKSSLPQMFASKMLSQSDNPLPVPYRNSAADSQ KLSVAMKFKGQLFQLMQRLESTTPHFIRCIKPNNLQLPAIYEQGLVLQQLKCCGVLEVVRISRS GYPTRMTHQKFARRYGFLLLEDVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQKPLGL LSLLDEESTFPNATDLTFANKLKQHLNNNSCFRGERGKAFAVRHYAGEVAYDTSGFLEKNRDLL HMDSIQFLAKCKSSLPQMFASKMLSQSDNPLPVPYRNSAADSQKLSVAMKFKGQLFQLMQRLES TTPHFIRCIKPNNLQLPAIYEQGLVLQQLKCCGVLEVVRISRSGYPTRMTHQKFARRYGFLLLE DVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQ(+) MAFFFLRMSHLKTHLVFRLQFFTSLTFCLRCIKLGTQNCSFELARSHWGCCLC*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |