Detail information of Os10g0488800_circ_igg.2


General Information
CircRNA Name Os10g0488800_circ_igg.2
ID in PlantcircBase osa_circ_007213
Alias NA
Organism Oryza sativa
Position chr10: 18532328-18538589  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os10g0488800_circ_igg.1 Os10g0488800_circ_g.1 Os10g0488800_circ_g.2 Os10g0488800_circ_g.3 Os10g0488800_circ_g.4 Os10g0488800_circ_g.5 Os10g0488800_circ_g.6 Os10g0488800_circ_g.7 Os10g0488800_circ_g.8
Support reads 1
Tissues shoot
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTTCCTTGCTATCTTTAAGGCATTCGTGGTTGTCTTGTTCGAAGATGTGCTGGCAATGTTGAT
CTATTGAATGTGCTAAGAGAATTCGAATCAAAGAAGaagcacagggttttttgccagcttccaa
atagtgattgggccttatgcactgtaattacaacctccggtgacgattccgtactaaagcttcc
tgaaggaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.235681091
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017