Detail information of Os10g0488800_circ_g.7


General Information
CircRNA Name Os10g0488800_circ_g.7
ID in PlantcircBase osa_circ_007220
Alias NA
Organism Oryza sativa
Position chr10: 18537812-18538015  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os10g0488800
Parent gene annotation Myosin head, motor region domain containing protein. (Os10t04888
00-01);Similar to Myosin head family protein, expressed. (Os10t0
488800-02)
Parent gene strand +
Alternative splicing Os10g0488800_circ_igg.1 Os10g0488800_circ_igg.2 Os10g0488800_circ_g.1 Os10g0488800_circ_g.2 Os10g0488800_circ_g.3 Os10g0488800_circ_g.4 Os10g0488800_circ_g.5 Os10g0488800_circ_g.6 Os10g0488800_circ_g.8
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   TT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTAAATATGTTTGCAGTTTCTTCATAAAATTTGTTCTGCAATTTTTATGGTGCCCCAGAATGGT
CTATAGCATTTAATGACAATTATCTTCTATTGCTGAgtgagctaagcagcctttgttttattta
ttcacttcctggtaatgagtgtattgccaataactgttggccttgtttttctgaatgagcgtta
aatgtttg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 204
Transcript exons: 18537812-18538015
GTGAGCTAAGCAGCCTTTGTTTTATTTATTCACTTCCTGGTAATGAGTGTATTGCCAATAACTG
TTGGCCTTGTTTTTCTGAATGAGCGTTAAATGTTTGCAAACTAAATATGTTTGCAGTTTCTTCA
TAAAATTTGTTCTGCAATTTTTATGGTGCCCCAGAATGGTCTATAGCATTTAATGACAATTATC
TTCTATTGCTGA

Genomic sequence GTGAGCTAAGCAGCCTTTGTTTTATTTATTCACTTCCTGGTAATGAGTGTATTGCCAATAACTG
TTGGCCTTGTTTTTCTGAATGAGCGTTAAATGTTTGCAAACTAAATATGTTTGCAGTTTCTTCA
TAAAATTTGTTCTGCAATTTTTATGGTGCCCCAGAATGGTCTATAGCATTTAATGACAATTATC
TTCTATTGCTGA
Conservation Information
Conserved circRNAs NA
PMCS 0.236503268
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017