Detail information of Os10g0488800_circ_igg.1


General Information
CircRNA Name Os10g0488800_circ_igg.1
ID in PlantcircBase osa_circ_007212
Alias NA
Organism Oryza sativa
Position chr10: 18532328-18534891  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os10g0488800_circ_igg.2 Os10g0488800_circ_g.1 Os10g0488800_circ_g.2 Os10g0488800_circ_g.3 Os10g0488800_circ_g.4 Os10g0488800_circ_g.5 Os10g0488800_circ_g.6 Os10g0488800_circ_g.7 Os10g0488800_circ_g.8
Support reads 1
Tissues shoot
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATAATGTTTTCACGATGGTTTCTGCAATTCTATGGCTAGGAGATGTCTCTTTCACGGTCATTG
ACAACGAAAACCATGTTGAGATTGTTGTAGATGAAGaagcacagggttttttgccagcttccaa
atagtgattgggccttatgcactgtaattacaacctccggtgacgattccgtactaaagcttcc
tgaaggaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAGCACAGGGTTTTTTGCCAGCTTCCAAATAGTGATTGGGCCTTATGCACTGTAATTACAACCT
CCGGTGACGATTCCGTACTAAAGCTTCCTGAAGGAAAAGTAAGCAACCTAATTTGCTTTGTTGA
AGGCCTTATGGTTGGTTTCAGAGTATGATAATCTGATTCTCAGTCATCTGATTTAAGGTACTGA
GGTTGAAAACAGAGAGCCTTGAAGCTGCAAATCCTGAAATTCTTGACGGGGTGGATGATCTTAT
GCAGCTAAGTTATCTAAGTGAGCCATCCGTTCTGTACAATTTGCAGTACAGATACTCTCAAGAC
TTGATATATGTAAGGATAAATCTGAACTTCTTTTCTCCTTTATTTGGGAGTTCTATGGCTTTTA
TAGTGATACTATATTGTACTGTAGACTAAAGCAGGTCCAGTTTTGGTGGCGGTCAATCCTTTTA
AGAAAGTTCCTCTATATGGTAATGAGTACATTGATGCATATAGAAATAAAACAAAGGATAGCCC
ACACGTTTATGCAATAGCAGATTCAGCCCTCCGTGAAATGAAAAGAGGTAATTCCACTTCTGTT
AATACAACTACATATGTCTTGATGGCGCCATCTAAATTGAGAACTAACTAAGTATTATGTTCAT
TTACAGATGAAGTTAACCAGTCTATCATCATAAGGTTGGTATTCTTTTTTCCAAGTTGGAAGCA
TTTAATGGAATTCTTAGTGCAAGGAAGTCTTGCACCATAGTTGATGTACCATATTAATATGTTA
AGCCACACAAGTATGCATTTTCATAGTAATAGGTTTCATTTTCTGTTACTTTTGCTGCATGTAA
GTAGAATTAATAGTGCCCCAACTACCAGCCAACATACTTGCTGAACTAGTTTTCTCATTGACAG
ATGGATTCCTGTATTGTTCATTTATCAAGATCAGAACATAAGGGTTTTACTGAGATGATTAAAC
GATCCCACTGTTCTTTGGCTTTCTAGAGTTAGAAATTTAATGGTTGCCTAAGATATACAATTGG
CGAGTCAACATTCAAATATTATGCACATTTTCCATTATGTTACCCTTGTTTTTTTCTCTTTTCT
TTCCTGTAACACCAAAACTTTTACCTTTTTGTATGTCTATCAAATCCTGTGAAAAATCCGATGA
CAACATAATGCCATCTGGTAGAAATATTTTACTTTGATTACAAGTTAACAGTTAGCTTGTTTTT
TGAGGTCATTTTTTTAATTGATGTCATTTTTAATTATACCATGGTATATATTGATTATATGAAT
GAAGGATGTCTTCTTTTTAATATATATAGTGGTGAGAGTGGAGCAGGAAAGACAGAAACTGCAA
AGATTGCTATGCAGTATTTGGCTTCTCTTGGAGGTGGGGGTGGCATAGAATATGAGATCCTACA
AACCAACCCAATACTCGAGGCTTTTGGCAACGCAAAGACACTAAGAAATGACAACTCAAGTCGC
TTTGTAAGTAATTTCTTGTGGGTATTGTAATACCACAATGTAGAACAAAGAGTTTGATTGATAT
CCTTGTTTTGTATTACAGGGAAAGCTCATTGAAATTCATTTTAGTACAACTGGAAGGATTTGTG
GTGCCATGATTCAAACATGTATGTGAATTTGTACTGAGTACCCATTTTCAATATAATGTACCAT
TTTCTGGTTTCAGATTGATTTTCTTACTTTTACTGACAATCTCCCCTAATGTTTCACCGTATGG
CCAGTTCTACTTGAGAAGGTAACTCCTAAATTTGTGAATGTCCCTTTTCCTTATAAAAACGAAT
ATGATATTTCACGAAGTGTAATTTAAACTGACATCCATTTTAACCTATGCCAGTCAAGGGTTGT
ACAATGTGCAGTTGGCGAGCGCTCCTACCATATTTTTTATCAACTATGTGCCGGTGCTCCTGCG
TCCCTCAGAGGTACATATGACAGTGTCTGATTATACCATCACAGGCTTGTTTTTAGTATATCGT
ATCTTTTCTATGTATTGAAAGATTTCTTGTCTGTCTCGCTCAGTTTTTAACACAGATTCTATGC
TACGTTTTCACTGTTGACAGTTCTCTGTTTCTTCTTTGTTGCTCATCTATTTTGCTCTGTGGAC
AGTACTTGGCAAGAGCAAACCATTGTTACCTTGTAAACTTACTTCTAGTGTTCTGATACAGATA
AGTTGAATATGAAGAAAGCGGATGAATACAAATATTTGAAGCAGAGTTGCTGCTATTCAATTGC
CGGTGTGGATGATGCTCAAATGTTCCGTACTGTAACGGTATGACACTTCTGATGTCTCATTCTA
CACATGCCCCTTTTTGTGTGCAATAGGACTATACCATACCATGTTACAATAATCCTATCGATGC
ATGTCAGTAGTATTATATTTTTGCTGCTACCACGTTTCTGACTGCTTGGCATTTCAGGAAGCTA
TGAACATCGTTCATATCAGCAAAGAGGACCAAGATAATGTTTTCACGATGGTTTCTGCAATTCT
ATGGCTAGGAGATGTCTCTTTCACGGTCATTGACAACGAAAACCATGTTGAGATTGTTGTAGAT
GAAG
Conservation Information
Conserved circRNAs osi_circ_008545
PMCS 0.257587994
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017