Detail information of Os10g0488800_circ_g.1


General Information
CircRNA Name Os10g0488800_circ_g.1
ID in PlantcircBase osa_circ_007214
Alias NA
Organism Oryza sativa
Position chr10: 18533637-18534257  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0488800
Parent gene annotation Myosin head, motor region domain containing protein. (Os10t04888
00-01);Similar to Myosin head family protein, expressed. (Os10t0
488800-02)
Parent gene strand +
Alternative splicing Os10g0488800_circ_igg.1 Os10g0488800_circ_igg.2 Os10g0488800_circ_g.2 Os10g0488800_circ_g.3 Os10g0488800_circ_g.4 Os10g0488800_circ_g.5 Os10g0488800_circ_g.6 Os10g0488800_circ_g.7 Os10g0488800_circ_g.8
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0488800-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTAACCTATGCCAGTCAAGGGTTGTACAATGTGCAGTTGGCGAGCGCTCCTACCATATTTTTT
ATCAACTATGTGCCGGTGCTCCTGCGTCCCTCAGAGtggtgagagtggagcaggaaagacagaa
actgcaaagattgctatgcagtatttggcttctcttggaggtgggggtggcatagaatatgaga
tcctacaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGGTGAGAGTGGAGCAGGAAAGACAGAAACTGCAAAGATTGCTATGCAGTATTTGGCTTCTCTT
GGAGGTGGGGGTGGCATAGAATATGAGATCCTACAAACCAACCCAATACTCGAGGCTTTTGGCA
ACGCAAAGACACTAAGAAATGACAACTCAAGTCGCTTTGTAAGTAATTTCTTGTGGGTATTGTA
ATACCACAATGTAGAACAAAGAGTTTGATTGATATCCTTGTTTTGTATTACAGGGAAAGCTCAT
TGAAATTCATTTTAGTACAACTGGAAGGATTTGTGGTGCCATGATTCAAACATGTATGTGAATT
TGTACTGAGTACCCATTTTCAATATAATGTACCATTTTCTGGTTTCAGATTGATTTTCTTACTT
TTACTGACAATCTCCCCTAATGTTTCACCGTATGGCCAGTTCTACTTGAGAAGGTAACTCCTAA
ATTTGTGAATGTCCCTTTTCCTTATAAAAACGAATATGATATTTCACGAAGTGTAATTTAAACT
GACATCCATTTTAACCTATGCCAGTCAAGGGTTGTACAATGTGCAGTTGGCGAGCGCTCCTACC
ATATTTTTTATCAACTATGTGCCGGTGCTCCTGCGTCCCTCAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.324191318
Functional Information
Coding potential Y
Potential coding position 18534188-18533716(+)
18533681-18533716(+)
18533894-18534254(-)
Potential amino acid sequence MCSWRALLPYFLSTMCRCSCVPQSGESGAGKTETAKIAMQYLASLGGGGGIEYEILQTNPILEA
FGNAKTLRNDNSSRFGKLIEIHFSTTGRICGAMIQTFLLEKSRVVQCAVGERSYHIFYQLCAGA
PASLRVVRVEQERQKLQRLLCSIWLLLEVGVA*(+)
MQYLASLGGGGGIEYEILQTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSTTGRICGAMIQTFL
LEKSRVVQCAVGERSYHIFYQLCAGAPASLRVVRVEQERQKLQRLLCSIWLLLEVGVA*(+)
MSFPKRLELSFLSVFALPKASSIGLVCRISYSMPPPPPREAKYCIAIFAVSVFPAPLSPL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017