Detail information of Os11g0525600_circ_g.4


General Information
CircRNA Name Os11g0525600_circ_g.4
ID in PlantcircBase osa_circ_009459
Alias NA
Organism Oryza sativa
Position chr11: 19059632-19062058  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0525600
Parent gene annotation Similar to Alpha-mannosidase. (Os11t0525600-01);Similar to Alpha
-mannosidase. (Os11t0525600-02);Similar to predicted protein. (O
s11t0525600-03);Similar to predicted protein. (Os11t0525600-04);
Similar to predicted protein. (Os11t0525600-05)
Parent gene strand +
Alternative splicing Os11g0525600_circ_g.2 Os11g0525600_circ_g.3 Os11g0525600_circ_g.5 Os11g0525600_circ_g.6 Os11g0525600_circ_g.7 Os11g0525600_circ_g.8 Os11g0525600_circ_g.9 Os11g0525600_circ_g.10 Os11g0525600_circ_g.11 Os11g0525600_circ_g.12 Os11g0525600_circ_g.13 Os11g0525600_circ_g.14 Os11g0525600_circ_g.15 Os11g0525600_circ_g.16
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0525600-03:10
Os11t0525600-02:10
Os11t0525600-04:2
Os11t0525600-01:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTTTATAGGCCGAGAAGCTGGTTTCATCCTCTCTCTCTTGCTTGAGCCAGTCAGGCTCAAAA
TCACATTGTCCGTCCCAAACAACGAATTTTGAACAGgcattcttccagagatggtggagacagc
agagcgacatgattaaggatatagtgaaggggctcatcagcactggacgattggaattaatgta
gggtttaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCATTCTTCCAGAGATGGTGGAGACAGCAGAGCGACATGATTAAGGATATAGTGAAGGGGCTCA
TCAGCACTGGACGATTGGAATTAATGTAGGGTTTAAATCGAATATCGCTATGTATGCTGCATTG
GTAGTCATGTCTGTGTTGTATAGAGAATGACATGCTTCTTTTGCTGTTGCAGAAACGGGGGAAT
GTGCATGCATGATGAAGCGACCGTGCACTACATTGACATGATAGACCAGACTACGCTCGGGCAC
AGGTTCATCAAGGAGGAGTTTGGTCAGATTCCAAGGATTGGTTGGCAGATTGATCCGTTTGGGC
ACTCCGCAGTTCAGGCTTACCTCCTAGGCACAGAAGTAATCCACTGAACTCATTGATGCCGTCC
TTCCAGTGTTTAATTCGACTTAAATGTAAAATGCTGTTATCATAGTAACTAGTTATCAGCCCGG
CGATAGTAACTAGTTATCACCCATCATAGGTAGTTATGTGCTGAGATACAAAAATGTCATTATG
TATACCTTGCTATCCCCTAAAGAGTGATGCCACAGAGAGCTTTTGTTGACAACACAATGTAGCT
ACTGAATCTACACAATCCAATTGTTTAAGTGAAATTAGATTTACCAGAAAAGTAATTGCTCAGC
TAGCATTTTATTATGTTTCAGGTAGGATTCGATGCTTTTTATTTTTTCCGGATTGATTACCAAG
ACCGTGACACACGGAAGGGAACAAAAGAGCTCGAGGTTGTGTGGAGGGGCTCCAAGACCTTCGG
CTCATCAGCTGACGTAAGTGACCTCTTTTTTTCACGGTTAATGTTATGCCTCAATTTGATGTTC
TTAAACTCTGGGGATTCCATATTTCATATGAAACACACATTTTCTTACAGATCTTTGCTGGCAT
CTTCCCAAAAAATTATGAACCACCTCCTGGTCAGTTTTACTTCGAAGTTGATGATACTTCCCCA
ATCGTCCAGGTAAACTAATGAGTACTCTACTAATGCATATCATTCAACACCAGACATGAACTTA
TACATTCCTTGCCTCTATGCAGGATGATCCCCTTCTTTTTGATTATAATGTGGAGCAACGGGTG
GATGACTTTGTTGCTGCAGCTATAGCACAGGTACATTAAACTGTATGTTCACACTTTTTTCATG
CTGATGTAGACCCTCTATGGAGCCATATGCATTGCATGGAAATCCATTAGTCATGTTGATTGAT
GCTACTGCAAAGTGCAAACATCTTATTCAATTTAGACTGCCTTTCTGGATGTTGTAGTGTTAAG
TGTTTGTCACAAATTGAGAATGCAGTTTTGGTGTTCCGTATTCCATGATATGTCGATCATTCTG
CTCTTAATATTCAAAGATATTAGCTAAATGACAACGTTTTAACTTGAAGTTATTGTTCTACTCA
GCAATGAGTTGTTCATCCTAATTCATGCTCCTTTCTTTCTTTTCTCTAGGCAAATATTACAAGG
ACAAATCACGTTATGTTTACAATGGGCACAGACTTCAAATATCAATATGCAGAAAGTTGGTTCA
GACAGATGGACAAATTAATTCACTACGTTAATAAGGTTAAGATCAGCATGGATATTACAAATGC
TGACTATTGTTTAACTAATTTAGTTTCACCATGAAGTTGTAATGATGATGATTTCAACATGTTG
TTCCATTACCTCAGGATGGCCGTGTCAATGCTCTGTATTCCACACCTTCGATTTATACTGATGC
AAAACATGCTGAAAATGTGCCATGGCCTCTCAAGACTAATGATTTTTTCCCGTATGTTCTAACC
TTATATTTCATAATTGATATAATTAACTTCATTTTTGTTGCTTTCACATGCAAATGACTGTATT
TCTTCCATCAGGTATGCAGACAACCCAAATGCATATTGGACAGGTTACTTCACAAGCAGACCTG
CCTTAAAACGATACGTTCGTGTTATGAGTGGATATTACTTGGTAAATTTTCATCTTTCATTACT
CTAGCATTCAGATGTGCAGTTTCAGTATTATATATTTTCATGGTTACTTGGTACTTTGTGGTGT
TCATATGCTTAATATTTTATTTGTTTTCACTTTTCAGGCAGCTAGGCAGTTGGAATTCTTTAAA
GGGAGAAGCAACTCTGATCTCACAACAGATAGTTTAGCTGATGCTCTAGCTCTTGCTCAGCACC
ATGATGCTGTTACAGGAACGGAGAAGCAACATGTCGCAAATGACTATGCAAAGAGATTATCAAT
TGGCTATACACAAGTGAGTTCCCAAGAGTACTGTTAATTCATAGATGATGTTCTCTTTTGGGGT
TTGATCGCTTCAATGAGTTCGATTTTTTTATAGGCCGAGAAGCTGGTTTCATCCTCTCTCTCTT
GCTTGAGCCAGTCAGGCTCAAAATCACATTGTCCGTCCCAAACAACGAATTTTGAACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.138030731
Functional Information
Coding potential Y
Potential coding position 19059669-19062055(+)
19059831-19061877(-)
19059637-19061819(-)
Potential amino acid sequence MIKDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFG
HSAVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEP
PPGQFYFEVDDTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAE
SWFRQMDKLIHYVNKDGRVNALYSTPSIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTS
RPALKRYVRVMSGYYLAARQLEFFKGRSNSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAK
RLSIGYTQAEKLVSSSLSCLSQSGSKSHCPSQTTNFEQAFFQRWWRQQSDMIKDIVKGLISTGR
LELINGGMCMHDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFGHSAVQAYLLGTEVG
FDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEPPPGQFYFEVDDTSP
IVQDDPLLFDYNVEQRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAESWFRQMDKLIHYVN
KDGRVNALYSTPSIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTSRPALKRYVRVMSGY
YLAARQLEFFKGRSNSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAKRLSIGYTQAEKLVS
SSLSCLSQSGSKSHCPSQTTNFEQAFFQRWWRQQSDMIKDIVKGLISTGRLELINGGMCMHDEA
TVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFGHSAVQAYLLGTEVGFDAFYFFRIDYQDR
DTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEPPPGQFYFEVDDTSPIVQDDPLLFDYNVE
QRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAESWFRQMDKLIHYVNKDGRVNALYSTPSI
YTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTSRPALKRYVRVMSGYYLAARQLEFFKGRS
NSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAKRLSIGYTQAEKLVSSSLSCLSQSGSKSH
CPSQTTNFEQAFFQRWWRQQSDMIKDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLG
HRFIKEEFGQIPRIGWQIDPFGHSAVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWR
GSKTFGSSADIFAGIFPKNYEPPPGQFYFEVDDTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQA
NITRTNHVMFTMGTDFKYQYAESWFRQMDKLIHYVNKDGRVNALYSTPSIYTDAKHAENVPWPL
KTNDFFPYADNPNAYWTGYFTSRPALKRYVRVMSGYYLAARQLEFFKGRSNSDLTTDSLADALA
LAQHHDAVTGTEKQHVANDYAKRLSIGYTQAEKLVSSSLSCLSQSGSKSHCPSQTTNFEQ(+)
MHIPPFINSNRPVLMSPFTISLIMSLCCLHHLWKNACSKFVVWDGQCDFEPDWLKQEREDETSF
SACV*(-)
MPVQNSLFGTDNVILSLTGSSKRERMKPASRLVYSQLIISLHSHLRHVASPFL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017