Detail information of Os11g0525600_circ_g.5


General Information
CircRNA Name Os11g0525600_circ_g.5
ID in PlantcircBase osa_circ_009460
Alias Os_ciR7072
Organism Oryza sativa
Position chr11: 19059632-19063074  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os11g0525600
Parent gene annotation Similar to Alpha-mannosidase. (Os11t0525600-01);Similar to Alpha
-mannosidase. (Os11t0525600-02);Similar to predicted protein. (O
s11t0525600-03);Similar to predicted protein. (Os11t0525600-04);
Similar to predicted protein. (Os11t0525600-05)
Parent gene strand +
Alternative splicing Os11g0525600_circ_g.2 Os11g0525600_circ_g.3 Os11g0525600_circ_g.4 Os11g0525600_circ_g.6 Os11g0525600_circ_g.7 Os11g0525600_circ_g.8 Os11g0525600_circ_g.9 Os11g0525600_circ_g.10 Os11g0525600_circ_g.11 Os11g0525600_circ_g.12 Os11g0525600_circ_g.13 Os11g0525600_circ_g.14 Os11g0525600_circ_g.15 Os11g0525600_circ_g.16
Support reads 2/2
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0525600-04:6
Os11t0525600-05:2
Os11t0525600-02:14
Os11t0525600-03:14
Os11t0525600-01:14
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGAAGTGAAAATAGTAACATGCAAATTGGGCAAGGACAGTTGAAACTTCAATACAATGCAGCT
GGAGCATTATCTCTGTACTCCAATAGTAAGACCCAGgcattcttccagagatggtggagacagc
agagcgacatgattaaggatatagtgaaggggctcatcagcactggacgattggaattaatgta
gggtttaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1590
Transcript exons: 19059632-19059720,19059812-19059986,19060293-19060412,19
060514-19060600,19060678-19060749,19061089-19061202,1906
1310-19061410,19061499-19061592,19061717-19061884,190619
69-19062058,19062210-19062275,19062398-19062454,19062631
-19062850,19062938-19063074
GCATTCTTCCAGAGATGGTGGAGACAGCAGAGCGACATGATTAAGGATATAGTGAAGGGGCTCA
TCAGCACTGGACGATTGGAATTAATAAACGGGGGAATGTGCATGCATGATGAAGCGACCGTGCA
CTACATTGACATGATAGACCAGACTACGCTCGGGCACAGGTTCATCAAGGAGGAGTTTGGTCAG
ATTCCAAGGATTGGTTGGCAGATTGATCCGTTTGGGCACTCCGCAGTTCAGGCTTACCTCCTAG
GCACAGAAGTAGGATTCGATGCTTTTTATTTTTTCCGGATTGATTACCAAGACCGTGACACACG
GAAGGGAACAAAAGAGCTCGAGGTTGTGTGGAGGGGCTCCAAGACCTTCGGCTCATCAGCTGAC
ATCTTTGCTGGCATCTTCCCAAAAAATTATGAACCACCTCCTGGTCAGTTTTACTTCGAAGTTG
ATGATACTTCCCCAATCGTCCAGGATGATCCCCTTCTTTTTGATTATAATGTGGAGCAACGGGT
GGATGACTTTGTTGCTGCAGCTATAGCACAGGCAAATATTACAAGGACAAATCACGTTATGTTT
ACAATGGGCACAGACTTCAAATATCAATATGCAGAAAGTTGGTTCAGACAGATGGACAAATTAA
TTCACTACGTTAATAAGGATGGCCGTGTCAATGCTCTGTATTCCACACCTTCGATTTATACTGA
TGCAAAACATGCTGAAAATGTGCCATGGCCTCTCAAGACTAATGATTTTTTCCCGTATGCAGAC
AACCCAAATGCATATTGGACAGGTTACTTCACAAGCAGACCTGCCTTAAAACGATACGTTCGTG
TTATGAGTGGATATTACTTGGCAGCTAGGCAGTTGGAATTCTTTAAAGGGAGAAGCAACTCTGA
TCTCACAACAGATAGTTTAGCTGATGCTCTAGCTCTTGCTCAGCACCATGATGCTGTTACAGGA
ACGGAGAAGCAACATGTCGCAAATGACTATGCAAAGAGATTATCAATTGGCTATACACAAGCCG
AGAAGCTGGTTTCATCCTCTCTCTCTTGCTTGAGCCAGTCAGGCTCAAAATCACATTGTCCGTC
CCAAACAACGAATTTTGAACAGTGTCCGCTCCTAAATATTACATATTGCCCCCCTTCCGAGATG
GACCTTTCTCAAGGGAAAAGTTTGGTTGTGCTTGTGTACAACTCTCTTGGGTGGAAACGGGAGG
ATGTCCTTCGCATACCGGTCATCAGTGACTCAATTGTTGTTCATGATTCTGAGGGAAGAGAAGT
TGAATCACAACTTCTGCCTATAGCTAATGCATCTTTGTACATGCGGGAGAAACATGTCAAGGCT
TACCTAGGCATGTTACCAGCTGCAAAACCCAAGTTTTGGCTTGCTTTTCCAGTTTCTGTACCAC
CTCTTGGTTTCAATACGTACTTTATATCAAGCGGGAAGAAATCAGCATCAGTCTCTTTGATGTC
CACTCTGCACTCATCTCAAGGAAGTGAAAATAGTAACATGCAAATTGGGCAAGGACAGTTGAAA
CTTCAATACAATGCAGCTGGAGCATTATCTCTGTACTCCAATAGTAAGACCCAG

Genomic sequence GCATTCTTCCAGAGATGGTGGAGACAGCAGAGCGACATGATTAAGGATATAGTGAAGGGGCTCA
TCAGCACTGGACGATTGGAATTAATGTAGGGTTTAAATCGAATATCGCTATGTATGCTGCATTG
GTAGTCATGTCTGTGTTGTATAGAGAATGACATGCTTCTTTTGCTGTTGCAGAAACGGGGGAAT
GTGCATGCATGATGAAGCGACCGTGCACTACATTGACATGATAGACCAGACTACGCTCGGGCAC
AGGTTCATCAAGGAGGAGTTTGGTCAGATTCCAAGGATTGGTTGGCAGATTGATCCGTTTGGGC
ACTCCGCAGTTCAGGCTTACCTCCTAGGCACAGAAGTAATCCACTGAACTCATTGATGCCGTCC
TTCCAGTGTTTAATTCGACTTAAATGTAAAATGCTGTTATCATAGTAACTAGTTATCAGCCCGG
CGATAGTAACTAGTTATCACCCATCATAGGTAGTTATGTGCTGAGATACAAAAATGTCATTATG
TATACCTTGCTATCCCCTAAAGAGTGATGCCACAGAGAGCTTTTGTTGACAACACAATGTAGCT
ACTGAATCTACACAATCCAATTGTTTAAGTGAAATTAGATTTACCAGAAAAGTAATTGCTCAGC
TAGCATTTTATTATGTTTCAGGTAGGATTCGATGCTTTTTATTTTTTCCGGATTGATTACCAAG
ACCGTGACACACGGAAGGGAACAAAAGAGCTCGAGGTTGTGTGGAGGGGCTCCAAGACCTTCGG
CTCATCAGCTGACGTAAGTGACCTCTTTTTTTCACGGTTAATGTTATGCCTCAATTTGATGTTC
TTAAACTCTGGGGATTCCATATTTCATATGAAACACACATTTTCTTACAGATCTTTGCTGGCAT
CTTCCCAAAAAATTATGAACCACCTCCTGGTCAGTTTTACTTCGAAGTTGATGATACTTCCCCA
ATCGTCCAGGTAAACTAATGAGTACTCTACTAATGCATATCATTCAACACCAGACATGAACTTA
TACATTCCTTGCCTCTATGCAGGATGATCCCCTTCTTTTTGATTATAATGTGGAGCAACGGGTG
GATGACTTTGTTGCTGCAGCTATAGCACAGGTACATTAAACTGTATGTTCACACTTTTTTCATG
CTGATGTAGACCCTCTATGGAGCCATATGCATTGCATGGAAATCCATTAGTCATGTTGATTGAT
GCTACTGCAAAGTGCAAACATCTTATTCAATTTAGACTGCCTTTCTGGATGTTGTAGTGTTAAG
TGTTTGTCACAAATTGAGAATGCAGTTTTGGTGTTCCGTATTCCATGATATGTCGATCATTCTG
CTCTTAATATTCAAAGATATTAGCTAAATGACAACGTTTTAACTTGAAGTTATTGTTCTACTCA
GCAATGAGTTGTTCATCCTAATTCATGCTCCTTTCTTTCTTTTCTCTAGGCAAATATTACAAGG
ACAAATCACGTTATGTTTACAATGGGCACAGACTTCAAATATCAATATGCAGAAAGTTGGTTCA
GACAGATGGACAAATTAATTCACTACGTTAATAAGGTTAAGATCAGCATGGATATTACAAATGC
TGACTATTGTTTAACTAATTTAGTTTCACCATGAAGTTGTAATGATGATGATTTCAACATGTTG
TTCCATTACCTCAGGATGGCCGTGTCAATGCTCTGTATTCCACACCTTCGATTTATACTGATGC
AAAACATGCTGAAAATGTGCCATGGCCTCTCAAGACTAATGATTTTTTCCCGTATGTTCTAACC
TTATATTTCATAATTGATATAATTAACTTCATTTTTGTTGCTTTCACATGCAAATGACTGTATT
TCTTCCATCAGGTATGCAGACAACCCAAATGCATATTGGACAGGTTACTTCACAAGCAGACCTG
CCTTAAAACGATACGTTCGTGTTATGAGTGGATATTACTTGGTAAATTTTCATCTTTCATTACT
CTAGCATTCAGATGTGCAGTTTCAGTATTATATATTTTCATGGTTACTTGGTACTTTGTGGTGT
TCATATGCTTAATATTTTATTTGTTTTCACTTTTCAGGCAGCTAGGCAGTTGGAATTCTTTAAA
GGGAGAAGCAACTCTGATCTCACAACAGATAGTTTAGCTGATGCTCTAGCTCTTGCTCAGCACC
ATGATGCTGTTACAGGAACGGAGAAGCAACATGTCGCAAATGACTATGCAAAGAGATTATCAAT
TGGCTATACACAAGTGAGTTCCCAAGAGTACTGTTAATTCATAGATGATGTTCTCTTTTGGGGT
TTGATCGCTTCAATGAGTTCGATTTTTTTATAGGCCGAGAAGCTGGTTTCATCCTCTCTCTCTT
GCTTGAGCCAGTCAGGCTCAAAATCACATTGTCCGTCCCAAACAACGAATTTTGAACAGGTTGG
TTTATATCTTTGTGTGTGTGAGTGTCTACCCTGGCACTGGTTAGAGCCAACTCCCTTCCCCTGT
AATGCGTGGGGTCTGCTTTCTCAACATGCATTGTAATTATACATGATGCAGTATTTCCTTTATC
ATTATATCTCCTTTTCAGTGTCCGCTCCTAAATATTACATATTGCCCCCCTTCCGAGATGGACC
TTTCTCAAGGGAAAAGTTTGGTGAGTTCTGTTCTTAACACAACACACAACTCTTTTCAAGATGA
ACTACCTGTTTGTAGTTGATTGATATTTTTAAGAAAAAAACATATAGCTTTATTTTTTTCCCAC
CTTTTATGTTACAGGTTGTGCTTGTGTACAACTCTCTTGGGTGGAAACGGGAGGATGTCCTTCG
CATACCGGTATGCAAATGTTATTCCCTGAAAAGCAACATATTTTGTTGTTTTAATTTGCTCGGC
ATATATCAATCGGAATTTTCTGCTTGTGCATAAGATGTGTGATGCACTGATGCATTGTGCTACT
ACCATGAAACTGCTTTTGCTTTAGATGGTTAATTAATATGCCAATTTATCAACAGGTCATCAGT
GACTCAATTGTTGTTCATGATTCTGAGGGAAGAGAAGTTGAATCACAACTTCTGCCTATAGCTA
ATGCATCTTTGTACATGCGGGAGAAACATGTCAAGGCTTACCTAGGCATGTTACCAGCTGCAAA
ACCCAAGTTTTGGCTTGCTTTTCCAGTTTCTGTACCACCTCTTGGTTTCAATACGTACTTTATA
TCAAGCGGGAAGAAATCAGGTGAATTAATTTCTTTCTTCACCAAAACTTAGTTAAGAGTTGCCA
TGAAGTTTGACGATTTTTCTTAATTCACTGCATATATTGCAGCATCAGTCTCTTTGATGTCCAC
TCTGCACTCATCTCAAGGAAGTGAAAATAGTAACATGCAAATTGGGCAAGGACAGTTGAAACTT
CAATACAATGCAGCTGGAGCATTATCTCTGTACTCCAATAGTAAGACCCAG
Conservation Information
Conserved circRNAs osi_circ_003167*
PMCS 0.228726271
Functional Information
Coding potential Y
Potential coding position 19059669-19063071(+)
19063032-19059668(+)
19059831-19063025(-)
19059637-19062829(-)
Potential amino acid sequence MIKDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFG
HSAVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEP
PPGQFYFEVDDTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAE
SWFRQMDKLIHYVNKDGRVNALYSTPSIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTS
RPALKRYVRVMSGYYLAARQLEFFKGRSNSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAK
RLSIGYTQAEKLVSSSLSCLSQSGSKSHCPSQTTNFEQCPLLNITYCPPSEMDLSQGKSLVVLV
YNSLGWKREDVLRIPVISDSIVVHDSEGREVESQLLPIANASLYMREKHVKAYLGMLPAAKPKF
WLAFPVSVPPLGFNTYFISSGKKSASVSLMSTLHSSQGSENSNMQIGQGQLKLQYNAAGALSLY
SNSKTQAFFQRWWRQQSDMIKDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHRFI
KEEFGQIPRIGWQIDPFGHSAVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKT
FGSSADIFAGIFPKNYEPPPGQFYFEVDDTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQANITR
TNHVMFTMGTDFKYQYAESWFRQMDKLIHYVNKDGRVNALYSTPSIYTDAKHAENVPWPLKTND
FFPYADNPNAYWTGYFTSRPALKRYVRVMSGYYLAARQLEFFKGRSNSDLTTDSLADALALAQH
HDAVTGTEKQHVANDYAKRLSIGYTQAEKLVSSSLSCLSQSGSKSHCPSQTTNFEQCPLLNITY
CPPSEMDLSQGKSLVVLVYNSLGWKREDVLRIPVISDSIVVHDSEGREVESQLLPIANASLYMR
EKHVKAYLGMLPAAKPKFWLAFPVSVPPLGFNTYFISSGKKSASVSLMSTLHSSQGSENSNMQI
GQGQLKLQYNAAGALSLYSNSKTQAFFQRWWRQQSDMIKDIVKGLISTGRLELINGGMCMHDEA
TVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFGHSAVQAYLLGTEVGFDAFYFFRIDYQDR
DTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEPPPGQFYFEVDDTSPIVQDDPLLFDYNVE
QRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAESWFRQMDKLIHYVNKDGRVNALYSTPSI
YTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTSRPALKRYVRVMSGYYLAARQLEFFKGRS
NSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAKRLSIGYTQAEKLVSSSLSCLSQSGSKSH
CPSQTTNFEQCPLLNITYCPPSEMDLSQGKSLVVLVYNSLGWKREDVLRIPVISDSIVVHDSEG
REVESQLLPIANASLYMREKHVKAYLGMLPAAKPKFWLAFPVSVPPLGFNTYFISSGKKSASVS
LMSTLHSSQGSENSNMQIGQGQLKLQYNAAGALSLYSNSKTQAFFQRWWRQQSDMIKDIVKGLI
STGRLELINGGMCMHDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFGHSAVQAYLLG
TEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEPPPGQFYFEVD
DTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAESWFRQMDKLI
HYVNKDGRVNALYSTPSIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTSRPALKRYVRV
MSGYYLAARQLEFFKGRSNSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAKRLSIGYTQAE
KLVSSSLSCLSQSGSKSHCPSQTTNFEQCPLLNITYCPPSEMDLSQGKSLVVLVYNSLGWKRED
VLRIPVISDSIVVHDSEGREVESQLLPIANASLYMREKHVKAYLGMLPAAKPKFWLAFPVSVPP
LGFNTYFISSGKKSASVSLMSTLHSSQGSENSNMQIGQGQLKLQYNAAGALSLYSNSKTQ(+)
MQLEHYLCTPIVRPRHSSRDGGDSRAT*(+)
MHIPPFINSNRPVLMSPFTISLIMSLCCLHHLWKNAWVLLLEYRDNAPAALY*(-)
MPGSYYWSTEIMLQLHCIEVSTVLAQFACYYFHFLEMSAEWTSKRLMLISSRLI*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017