Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Os11g0525600_circ_g.5 |
ID in PlantcircBase | osa_circ_009460 |
Alias | Os_ciR7072 |
Organism | Oryza sativa |
Position | chr11: 19059632-19063074 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | Os11g0525600 |
Parent gene annotation |
Similar to Alpha-mannosidase. (Os11t0525600-01);Similar to Alpha -mannosidase. (Os11t0525600-02);Similar to predicted protein. (O s11t0525600-03);Similar to predicted protein. (Os11t0525600-04); Similar to predicted protein. (Os11t0525600-05) |
Parent gene strand | + |
Alternative splicing | Os11g0525600_circ_g.2 Os11g0525600_circ_g.3 Os11g0525600_circ_g.4 Os11g0525600_circ_g.6 Os11g0525600_circ_g.7 Os11g0525600_circ_g.8 Os11g0525600_circ_g.9 Os11g0525600_circ_g.10 Os11g0525600_circ_g.11 Os11g0525600_circ_g.12 Os11g0525600_circ_g.13 Os11g0525600_circ_g.14 Os11g0525600_circ_g.15 Os11g0525600_circ_g.16 |
Support reads | 2/2 |
Tissues | root/root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os11t0525600-04:6 Os11t0525600-05:2 Os11t0525600-02:14 Os11t0525600-03:14 Os11t0525600-01:14 |
Conservation Information | |
---|---|
Conserved circRNAs | osi_circ_003167* |
PMCS | 0.228726271 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
19059669-19063071(+) 19063032-19059668(+) 19059831-19063025(-) 19059637-19062829(-) |
Potential amino acid sequence |
MIKDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFG HSAVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEP PPGQFYFEVDDTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAE SWFRQMDKLIHYVNKDGRVNALYSTPSIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTS RPALKRYVRVMSGYYLAARQLEFFKGRSNSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAK RLSIGYTQAEKLVSSSLSCLSQSGSKSHCPSQTTNFEQCPLLNITYCPPSEMDLSQGKSLVVLV YNSLGWKREDVLRIPVISDSIVVHDSEGREVESQLLPIANASLYMREKHVKAYLGMLPAAKPKF WLAFPVSVPPLGFNTYFISSGKKSASVSLMSTLHSSQGSENSNMQIGQGQLKLQYNAAGALSLY SNSKTQAFFQRWWRQQSDMIKDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHRFI KEEFGQIPRIGWQIDPFGHSAVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKT FGSSADIFAGIFPKNYEPPPGQFYFEVDDTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQANITR TNHVMFTMGTDFKYQYAESWFRQMDKLIHYVNKDGRVNALYSTPSIYTDAKHAENVPWPLKTND FFPYADNPNAYWTGYFTSRPALKRYVRVMSGYYLAARQLEFFKGRSNSDLTTDSLADALALAQH HDAVTGTEKQHVANDYAKRLSIGYTQAEKLVSSSLSCLSQSGSKSHCPSQTTNFEQCPLLNITY CPPSEMDLSQGKSLVVLVYNSLGWKREDVLRIPVISDSIVVHDSEGREVESQLLPIANASLYMR EKHVKAYLGMLPAAKPKFWLAFPVSVPPLGFNTYFISSGKKSASVSLMSTLHSSQGSENSNMQI GQGQLKLQYNAAGALSLYSNSKTQAFFQRWWRQQSDMIKDIVKGLISTGRLELINGGMCMHDEA TVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFGHSAVQAYLLGTEVGFDAFYFFRIDYQDR DTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEPPPGQFYFEVDDTSPIVQDDPLLFDYNVE QRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAESWFRQMDKLIHYVNKDGRVNALYSTPSI YTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTSRPALKRYVRVMSGYYLAARQLEFFKGRS NSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAKRLSIGYTQAEKLVSSSLSCLSQSGSKSH CPSQTTNFEQCPLLNITYCPPSEMDLSQGKSLVVLVYNSLGWKREDVLRIPVISDSIVVHDSEG REVESQLLPIANASLYMREKHVKAYLGMLPAAKPKFWLAFPVSVPPLGFNTYFISSGKKSASVS LMSTLHSSQGSENSNMQIGQGQLKLQYNAAGALSLYSNSKTQAFFQRWWRQQSDMIKDIVKGLI STGRLELINGGMCMHDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFGHSAVQAYLLG TEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEPPPGQFYFEVD DTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAESWFRQMDKLI HYVNKDGRVNALYSTPSIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTSRPALKRYVRV MSGYYLAARQLEFFKGRSNSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAKRLSIGYTQAE KLVSSSLSCLSQSGSKSHCPSQTTNFEQCPLLNITYCPPSEMDLSQGKSLVVLVYNSLGWKRED VLRIPVISDSIVVHDSEGREVESQLLPIANASLYMREKHVKAYLGMLPAAKPKFWLAFPVSVPP LGFNTYFISSGKKSASVSLMSTLHSSQGSENSNMQIGQGQLKLQYNAAGALSLYSNSKTQ(+) MQLEHYLCTPIVRPRHSSRDGGDSRAT*(+) MHIPPFINSNRPVLMSPFTISLIMSLCCLHHLWKNAWVLLLEYRDNAPAALY*(-) MPGSYYWSTEIMLQLHCIEVSTVLAQFACYYFHFLEMSAEWTSKRLMLISSRLI*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Ye et al., 2015;Chu et al., 2017 |