Detail information of Os11g0525600_circ_g.2


General Information
CircRNA Name Os11g0525600_circ_g.2
ID in PlantcircBase osa_circ_009457
Alias NA
Organism Oryza sativa
Position chr11: 19059632-19060412  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0525600
Parent gene annotation Similar to Alpha-mannosidase. (Os11t0525600-01);Similar to Alpha
-mannosidase. (Os11t0525600-02);Similar to predicted protein. (O
s11t0525600-03);Similar to predicted protein. (Os11t0525600-04);
Similar to predicted protein. (Os11t0525600-05)
Parent gene strand +
Alternative splicing Os11g0525600_circ_g.3 Os11g0525600_circ_g.4 Os11g0525600_circ_g.5 Os11g0525600_circ_g.6 Os11g0525600_circ_g.7 Os11g0525600_circ_g.8 Os11g0525600_circ_g.9 Os11g0525600_circ_g.10 Os11g0525600_circ_g.11 Os11g0525600_circ_g.12 Os11g0525600_circ_g.13 Os11g0525600_circ_g.14 Os11g0525600_circ_g.15 Os11g0525600_circ_g.16
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0525600-02:3
Os11t0525600-03:3
Os11t0525600-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTTTCCGGATTGATTACCAAGACCGTGACACACGGAAGGGAACAAAAGAGCTCGAGGTTGTG
TGGAGGGGCTCCAAGACCTTCGGCTCATCAGCTGACgcattcttccagagatggtggagacagc
agagcgacatgattaaggatatagtgaaggggctcatcagcactggacgattggaattaatgta
gggtttaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCATTCTTCCAGAGATGGTGGAGACAGCAGAGCGACATGATTAAGGATATAGTGAAGGGGCTCA
TCAGCACTGGACGATTGGAATTAATGTAGGGTTTAAATCGAATATCGCTATGTATGCTGCATTG
GTAGTCATGTCTGTGTTGTATAGAGAATGACATGCTTCTTTTGCTGTTGCAGAAACGGGGGAAT
GTGCATGCATGATGAAGCGACCGTGCACTACATTGACATGATAGACCAGACTACGCTCGGGCAC
AGGTTCATCAAGGAGGAGTTTGGTCAGATTCCAAGGATTGGTTGGCAGATTGATCCGTTTGGGC
ACTCCGCAGTTCAGGCTTACCTCCTAGGCACAGAAGTAATCCACTGAACTCATTGATGCCGTCC
TTCCAGTGTTTAATTCGACTTAAATGTAAAATGCTGTTATCATAGTAACTAGTTATCAGCCCGG
CGATAGTAACTAGTTATCACCCATCATAGGTAGTTATGTGCTGAGATACAAAAATGTCATTATG
TATACCTTGCTATCCCCTAAAGAGTGATGCCACAGAGAGCTTTTGTTGACAACACAATGTAGCT
ACTGAATCTACACAATCCAATTGTTTAAGTGAAATTAGATTTACCAGAAAAGTAATTGCTCAGC
TAGCATTTTATTATGTTTCAGGTAGGATTCGATGCTTTTTATTTTTTCCGGATTGATTACCAAG
ACCGTGACACACGGAAGGGAACAAAAGAGCTCGAGGTTGTGTGGAGGGGCTCCAAGACCTTCGG
CTCATCAGCTGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.176991347
Functional Information
Coding potential Y
Potential coding position 19059669-19060409(+)
19060304-19059668(+)
19059831-19060330(-)
19059637-19059897(-)
Potential amino acid sequence MIKDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFG
HSAVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTFGSSADAFFQRWWRQQSD
MIKDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFG
HSAVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTFGSSADAFFQRWWRQQSD
MIKDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFG
HSAVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTFGSSADAFFQRWWRQQSD
MIKDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFG
HSAVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTFGSSAD(+)
MLFIFSGLITKTVTHGREQKSSRLCGGAPRPSAHQLTHSSRDGGDSRAT*(+)
MHIPPFINSNRPVLMSPFTISLIMSLCCLHHLWKNASADEPKVLEPLHTTSSSFVPFRVSRSW*
(-)
MRQLMSRRSWSPSTQPRALLFPSVCHGLGNQSGKNKKHRILLLCLGGKPELRSAQTDQSANQSL
ESDQTPP*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017