Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os11g0525600_circ_g.3 |
ID in PlantcircBase | osa_circ_009458 |
Alias | NA |
Organism | Oryza sativa |
Position | chr11: 19059632-19061884 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os11g0525600 |
Parent gene annotation |
Similar to Alpha-mannosidase. (Os11t0525600-01);Similar to Alpha -mannosidase. (Os11t0525600-02);Similar to predicted protein. (O s11t0525600-03);Similar to predicted protein. (Os11t0525600-04); Similar to predicted protein. (Os11t0525600-05) |
Parent gene strand | + |
Alternative splicing | Os11g0525600_circ_g.2 Os11g0525600_circ_g.4 Os11g0525600_circ_g.5 Os11g0525600_circ_g.6 Os11g0525600_circ_g.7 Os11g0525600_circ_g.8 Os11g0525600_circ_g.9 Os11g0525600_circ_g.10 Os11g0525600_circ_g.11 Os11g0525600_circ_g.12 Os11g0525600_circ_g.13 Os11g0525600_circ_g.14 Os11g0525600_circ_g.15 Os11g0525600_circ_g.16 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os11t0525600-04:1 Os11t0525600-02:9 Os11t0525600-01:9 Os11t0525600-03:9 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.137725854 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
19059669-19061881(+) 19061809-19059668(+) 19059831-19061877(-) 19059637-19061819(-) |
Potential amino acid sequence |
MIKDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFG HSAVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEP PPGQFYFEVDDTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAE SWFRQMDKLIHYVNKDGRVNALYSTPSIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTS RPALKRYVRVMSGYYLAARQLEFFKGRSNSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAK RLSIGYTQAFFQRWWRQQSDMIKDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHR FIKEEFGQIPRIGWQIDPFGHSAVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGS KTFGSSADIFAGIFPKNYEPPPGQFYFEVDDTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQANI TRTNHVMFTMGTDFKYQYAESWFRQMDKLIHYVNKDGRVNALYSTPSIYTDAKHAENVPWPLKT NDFFPYADNPNAYWTGYFTSRPALKRYVRVMSGYYLAARQLEFFKGRSNSDLTTDSLADALALA QHHDAVTGTEKQHVANDYAKRLSIGYTQAFFQRWWRQQSDMIKDIVKGLISTGRLELINGGMCM HDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFGHSAVQAYLLGTEVGFDAFYFFRID YQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEPPPGQFYFEVDDTSPIVQDDPLLFD YNVEQRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAESWFRQMDKLIHYVNKDGRVNALYS TPSIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTSRPALKRYVRVMSGYYLAARQLEFF KGRSNSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAKRLSIGYTQAFFQRWWRQQSDMIKD IVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFGHSAV QAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEPPPGQ FYFEVDDTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAESWFR QMDKLIHYVNKDGRVNALYSTPSIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTSRPAL KRYVRVMSGYYLAARQLEFFKGRSNSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAKRLSI GYTQ(+) MMLLQERRSNMSQMTMQRDYQLAIHKHSSRDGGDSRAT*(+) MHIPPFINSNRPVLMSPFTISLIMSLCCLHHLWKNACV*(-) MLVYSQLIISLHSHLRHVASPFL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |