Detail information of Os11g0525600_circ_g.3


General Information
CircRNA Name Os11g0525600_circ_g.3
ID in PlantcircBase osa_circ_009458
Alias NA
Organism Oryza sativa
Position chr11: 19059632-19061884  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0525600
Parent gene annotation Similar to Alpha-mannosidase. (Os11t0525600-01);Similar to Alpha
-mannosidase. (Os11t0525600-02);Similar to predicted protein. (O
s11t0525600-03);Similar to predicted protein. (Os11t0525600-04);
Similar to predicted protein. (Os11t0525600-05)
Parent gene strand +
Alternative splicing Os11g0525600_circ_g.2 Os11g0525600_circ_g.4 Os11g0525600_circ_g.5 Os11g0525600_circ_g.6 Os11g0525600_circ_g.7 Os11g0525600_circ_g.8 Os11g0525600_circ_g.9 Os11g0525600_circ_g.10 Os11g0525600_circ_g.11 Os11g0525600_circ_g.12 Os11g0525600_circ_g.13 Os11g0525600_circ_g.14 Os11g0525600_circ_g.15 Os11g0525600_circ_g.16
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0525600-04:1
Os11t0525600-02:9
Os11t0525600-01:9
Os11t0525600-03:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCTCTAGCTCTTGCTCAGCACCATGATGCTGTTACAGGAACGGAGAAGCAACATGTCGCAAAT
GACTATGCAAAGAGATTATCAATTGGCTATACACAAgcattcttccagagatggtggagacagc
agagcgacatgattaaggatatagtgaaggggctcatcagcactggacgattggaattaatgta
gggtttaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCATTCTTCCAGAGATGGTGGAGACAGCAGAGCGACATGATTAAGGATATAGTGAAGGGGCTCA
TCAGCACTGGACGATTGGAATTAATGTAGGGTTTAAATCGAATATCGCTATGTATGCTGCATTG
GTAGTCATGTCTGTGTTGTATAGAGAATGACATGCTTCTTTTGCTGTTGCAGAAACGGGGGAAT
GTGCATGCATGATGAAGCGACCGTGCACTACATTGACATGATAGACCAGACTACGCTCGGGCAC
AGGTTCATCAAGGAGGAGTTTGGTCAGATTCCAAGGATTGGTTGGCAGATTGATCCGTTTGGGC
ACTCCGCAGTTCAGGCTTACCTCCTAGGCACAGAAGTAATCCACTGAACTCATTGATGCCGTCC
TTCCAGTGTTTAATTCGACTTAAATGTAAAATGCTGTTATCATAGTAACTAGTTATCAGCCCGG
CGATAGTAACTAGTTATCACCCATCATAGGTAGTTATGTGCTGAGATACAAAAATGTCATTATG
TATACCTTGCTATCCCCTAAAGAGTGATGCCACAGAGAGCTTTTGTTGACAACACAATGTAGCT
ACTGAATCTACACAATCCAATTGTTTAAGTGAAATTAGATTTACCAGAAAAGTAATTGCTCAGC
TAGCATTTTATTATGTTTCAGGTAGGATTCGATGCTTTTTATTTTTTCCGGATTGATTACCAAG
ACCGTGACACACGGAAGGGAACAAAAGAGCTCGAGGTTGTGTGGAGGGGCTCCAAGACCTTCGG
CTCATCAGCTGACGTAAGTGACCTCTTTTTTTCACGGTTAATGTTATGCCTCAATTTGATGTTC
TTAAACTCTGGGGATTCCATATTTCATATGAAACACACATTTTCTTACAGATCTTTGCTGGCAT
CTTCCCAAAAAATTATGAACCACCTCCTGGTCAGTTTTACTTCGAAGTTGATGATACTTCCCCA
ATCGTCCAGGTAAACTAATGAGTACTCTACTAATGCATATCATTCAACACCAGACATGAACTTA
TACATTCCTTGCCTCTATGCAGGATGATCCCCTTCTTTTTGATTATAATGTGGAGCAACGGGTG
GATGACTTTGTTGCTGCAGCTATAGCACAGGTACATTAAACTGTATGTTCACACTTTTTTCATG
CTGATGTAGACCCTCTATGGAGCCATATGCATTGCATGGAAATCCATTAGTCATGTTGATTGAT
GCTACTGCAAAGTGCAAACATCTTATTCAATTTAGACTGCCTTTCTGGATGTTGTAGTGTTAAG
TGTTTGTCACAAATTGAGAATGCAGTTTTGGTGTTCCGTATTCCATGATATGTCGATCATTCTG
CTCTTAATATTCAAAGATATTAGCTAAATGACAACGTTTTAACTTGAAGTTATTGTTCTACTCA
GCAATGAGTTGTTCATCCTAATTCATGCTCCTTTCTTTCTTTTCTCTAGGCAAATATTACAAGG
ACAAATCACGTTATGTTTACAATGGGCACAGACTTCAAATATCAATATGCAGAAAGTTGGTTCA
GACAGATGGACAAATTAATTCACTACGTTAATAAGGTTAAGATCAGCATGGATATTACAAATGC
TGACTATTGTTTAACTAATTTAGTTTCACCATGAAGTTGTAATGATGATGATTTCAACATGTTG
TTCCATTACCTCAGGATGGCCGTGTCAATGCTCTGTATTCCACACCTTCGATTTATACTGATGC
AAAACATGCTGAAAATGTGCCATGGCCTCTCAAGACTAATGATTTTTTCCCGTATGTTCTAACC
TTATATTTCATAATTGATATAATTAACTTCATTTTTGTTGCTTTCACATGCAAATGACTGTATT
TCTTCCATCAGGTATGCAGACAACCCAAATGCATATTGGACAGGTTACTTCACAAGCAGACCTG
CCTTAAAACGATACGTTCGTGTTATGAGTGGATATTACTTGGTAAATTTTCATCTTTCATTACT
CTAGCATTCAGATGTGCAGTTTCAGTATTATATATTTTCATGGTTACTTGGTACTTTGTGGTGT
TCATATGCTTAATATTTTATTTGTTTTCACTTTTCAGGCAGCTAGGCAGTTGGAATTCTTTAAA
GGGAGAAGCAACTCTGATCTCACAACAGATAGTTTAGCTGATGCTCTAGCTCTTGCTCAGCACC
ATGATGCTGTTACAGGAACGGAGAAGCAACATGTCGCAAATGACTATGCAAAGAGATTATCAAT
TGGCTATACACAA
Conservation Information
Conserved circRNAs NA
PMCS 0.137725854
Functional Information
Coding potential Y
Potential coding position 19059669-19061881(+)
19061809-19059668(+)
19059831-19061877(-)
19059637-19061819(-)
Potential amino acid sequence MIKDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFG
HSAVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEP
PPGQFYFEVDDTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAE
SWFRQMDKLIHYVNKDGRVNALYSTPSIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTS
RPALKRYVRVMSGYYLAARQLEFFKGRSNSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAK
RLSIGYTQAFFQRWWRQQSDMIKDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHR
FIKEEFGQIPRIGWQIDPFGHSAVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGS
KTFGSSADIFAGIFPKNYEPPPGQFYFEVDDTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQANI
TRTNHVMFTMGTDFKYQYAESWFRQMDKLIHYVNKDGRVNALYSTPSIYTDAKHAENVPWPLKT
NDFFPYADNPNAYWTGYFTSRPALKRYVRVMSGYYLAARQLEFFKGRSNSDLTTDSLADALALA
QHHDAVTGTEKQHVANDYAKRLSIGYTQAFFQRWWRQQSDMIKDIVKGLISTGRLELINGGMCM
HDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFGHSAVQAYLLGTEVGFDAFYFFRID
YQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEPPPGQFYFEVDDTSPIVQDDPLLFD
YNVEQRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAESWFRQMDKLIHYVNKDGRVNALYS
TPSIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTSRPALKRYVRVMSGYYLAARQLEFF
KGRSNSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAKRLSIGYTQAFFQRWWRQQSDMIKD
IVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFGHSAV
QAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEPPPGQ
FYFEVDDTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAESWFR
QMDKLIHYVNKDGRVNALYSTPSIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTSRPAL
KRYVRVMSGYYLAARQLEFFKGRSNSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAKRLSI
GYTQ(+)
MMLLQERRSNMSQMTMQRDYQLAIHKHSSRDGGDSRAT*(+)
MHIPPFINSNRPVLMSPFTISLIMSLCCLHHLWKNACV*(-)
MLVYSQLIISLHSHLRHVASPFL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017