Detail information of Os11g0525600_circ_g.6


General Information
CircRNA Name Os11g0525600_circ_g.6
ID in PlantcircBase osa_circ_009461
Alias NA
Organism Oryza sativa
Position chr11: 19059632-19066454  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0525600
Parent gene annotation Similar to Alpha-mannosidase. (Os11t0525600-01);Similar to Alpha
-mannosidase. (Os11t0525600-02);Similar to predicted protein. (O
s11t0525600-03);Similar to predicted protein. (Os11t0525600-04);
Similar to predicted protein. (Os11t0525600-05)
Parent gene strand +
Alternative splicing Os11g0525600_circ_g.2 Os11g0525600_circ_g.3 Os11g0525600_circ_g.4 Os11g0525600_circ_g.5 Os11g0525600_circ_g.7 Os11g0525600_circ_g.8 Os11g0525600_circ_g.9 Os11g0525600_circ_g.10 Os11g0525600_circ_g.11 Os11g0525600_circ_g.12 Os11g0525600_circ_g.13 Os11g0525600_circ_g.14 Os11g0525600_circ_g.15 Os11g0525600_circ_g.16
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0525600-05:12
Os11t0525600-02:24
Os11t0525600-04:16
Os11t0525600-01:24
Os11t0525600-03:24
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAGGATGGAGGTAATTGGGTGAATTCACACGTTACAAAATTCTCTGCAATGGATCCGGCCTAC
AGCTTGCCTGATAATGTTGCATTGCTTACTCTTCAGgcattcttccagagatggtggagacagc
agagcgacatgattaaggatatagtgaaggggctcatcagcactggacgattggaattaatgta
gggtttaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.102971197
Functional Information
Coding potential Y
Potential coding position 19059669-19066451(+)
19066433-19059668(+)
19059831-19066453(-)
Potential amino acid sequence MIKDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFG
HSAVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEP
PPGQFYFEVDDTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAE
SWFRQMDKLIHYVNKDGRVNALYSTPSIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTS
RPALKRYVRVMSGYYLAARQLEFFKGRSNSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAK
RLSIGYTQAEKLVSSSLSCLSQSGSKSHCPSQTTNFEQCPLLNITYCPPSEMDLSQGKSLVVLV
YNSLGWKREDVLRIPVISDSIVVHDSEGREVESQLLPIANASLYMREKHVKAYLGMLPAAKPKF
WLAFPVSVPPLGFNTYFISSGKKSASVSLMSTLHSSQGSENSNMQIGQGQLKLQYNAAGALSLY
SNSKTQVEANFEQKYKYYIGQDGNGSDPQASGAYIFRPNGTVPIKTDGQVPLTVLRGSILDEVH
QQINPWIYQINRVYKGKDYVETEFIVGPIPVDDGNGKELSTEVVTNMATNKTFYTDSSGRDFIK
RIRDYRSEWKIEVHQPIAGNYYPVNLGIYVEDGSRELSILVDRSVGGASIKDGQIELMLHRRLL
HDDGRGVAEALNETTCFDNQCEGLVIQGKYYLKIDPQGEGARWRRTFGQEIYSPLLIAFAEQDG
GNWVNSHVTKFSAMDPAYSLPDNVALLTLQAFFQRWWRQQSDMIKDIVKGLISTGRLELINGGM
CMHDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFGHSAVQAYLLGTEVGFDAFYFFR
IDYQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEPPPGQFYFEVDDTSPIVQDDPLL
FDYNVEQRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAESWFRQMDKLIHYVNKDGRVNAL
YSTPSIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTSRPALKRYVRVMSGYYLAARQLE
FFKGRSNSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAKRLSIGYTQAEKLVSSSLSCLSQ
SGSKSHCPSQTTNFEQCPLLNITYCPPSEMDLSQGKSLVVLVYNSLGWKREDVLRIPVISDSIV
VHDSEGREVESQLLPIANASLYMREKHVKAYLGMLPAAKPKFWLAFPVSVPPLGFNTYFISSGK
KSASVSLMSTLHSSQGSENSNMQIGQGQLKLQYNAAGALSLYSNSKTQVEANFEQKYKYYIGQD
GNGSDPQASGAYIFRPNGTVPIKTDGQVPLTVLRGSILDEVHQQINPWIYQINRVYKGKDYVET
EFIVGPIPVDDGNGKELSTEVVTNMATNKTFYTDSSGRDFIKRIRDYRSEWKIEVHQPIAGNYY
PVNLGIYVEDGSRELSILVDRSVGGASIKDGQIELMLHRRLLHDDGRGVAEALNETTCFDNQCE
GLVIQGKYYLKIDPQGEGARWRRTFGQEIYSPLLIAFAEQDGGNWVNSHVTKFSAMDPAYSLPD
NVALLTLQAFFQRWWRQQSDMIKDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHR
FIKEEFGQIPRIGWQIDPFGHSAVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGS
KTFGSSADIFAGIFPKNYEPPPGQFYFEVDDTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQANI
TRTNHVMFTMGTDFKYQYAESWFRQMDKLIHYVNKDGRVNALYSTPSIYTDAKHAENVPWPLKT
NDFFPYADNPNAYWTGYFTSRPALKRYVRVMSGYYLAARQLEFFKGRSNSDLTTDSLADALALA
QHHDAVTGTEKQHVANDYAKRLSIGYTQAEKLVSSSLSCLSQSGSKSHCPSQTTNFEQCPLLNI
TYCPPSEMDLSQGKSLVVLVYNSLGWKREDVLRIPVISDSIVVHDSEGREVESQLLPIANASLY
MREKHVKAYLGMLPAAKPKFWLAFPVSVPPLGFNTYFISSGKKSASVSLMSTLHSSQGSENSNM
QIGQGQLKLQYNAAGALSLYSNSKTQVEANFEQKYKYYIGQDGNGSDPQASGAYIFRPNGTVPI
KTDGQVPLTVLRGSILDEVHQQINPWIYQINRVYKGKDYVETEFIVGPIPVDDGNGKELSTEVV
TNMATNKTFYTDSSGRDFIKRIRDYRSEWKIEVHQPIAGNYYPVNLGIYVEDGSRELSILVDRS
VGGASIKDGQIELMLHRRLLHDDGRGVAEALNETTCFDNQCEGLVIQGKYYLKIDPQGEGARWR
RTFGQEIYSPLLIAFAEQDGGNWVNSHVTKFSAMDPAYSLPDNVALLTLQAFFQRWWRQQSDMI
KDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFGHS
AVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEPPP
GQFYFEVDDTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAESW
FRQMDKLIHYVNKDGRVNALYSTPSIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTSRP
ALKRYVRVMSGYYLAARQLEFFKGRSNSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAKRL
SIGYTQAEKLVSSSLSCLSQSGSKSHCPSQTTNFEQCPLLNITYCPPSEMDLSQGKSLVVLVYN
SLGWKREDVLRIPVISDSIVVHDSEGREVESQLLPIANASLYMREKHVKAYLGMLPAAKPKFWL
AFPVSVPPLGFNTYFISSGKKSASVSLMSTLHSSQGSENSNMQIGQGQLKLQYNAAGALSLYSN
SKTQVEANFEQKYKYYIGQDGNGSDPQASGAYIFRPNGTVPIKTDGQVPLTVLRGSILDEVHQQ
INPWIYQINRVYKGKDYVETEFIVGPIPVDDGNGKELSTEVVTNMATNKTFYTDSSGRDFIKRI
RDYRSEWKIEVHQPIAGNYYPVNLGIYVEDGSRELSILVDRSVGGASIKDGQIELMLHRRLLHD
DGRGVAEALNETTCFDNQCEGLVIQGKYYLKIDPQGEGARWRRTFGQEIYSPLLIAFAEQDGGN
WVNSHVTKFSAMDPAYSLPDNVALLTLQ(+)
MLHCLLFRHSSRDGGDSRAT*(+)
MHIPPFINSNRPVLMSPFTISLIMSLCCLHHLWKNA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017