Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Os11g0525600_circ_g.6 |
ID in PlantcircBase | osa_circ_009461 |
Alias | NA |
Organism | Oryza sativa |
Position | chr11: 19059632-19066454 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os11g0525600 |
Parent gene annotation |
Similar to Alpha-mannosidase. (Os11t0525600-01);Similar to Alpha -mannosidase. (Os11t0525600-02);Similar to predicted protein. (O s11t0525600-03);Similar to predicted protein. (Os11t0525600-04); Similar to predicted protein. (Os11t0525600-05) |
Parent gene strand | + |
Alternative splicing | Os11g0525600_circ_g.2 Os11g0525600_circ_g.3 Os11g0525600_circ_g.4 Os11g0525600_circ_g.5 Os11g0525600_circ_g.7 Os11g0525600_circ_g.8 Os11g0525600_circ_g.9 Os11g0525600_circ_g.10 Os11g0525600_circ_g.11 Os11g0525600_circ_g.12 Os11g0525600_circ_g.13 Os11g0525600_circ_g.14 Os11g0525600_circ_g.15 Os11g0525600_circ_g.16 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os11t0525600-05:12 Os11t0525600-02:24 Os11t0525600-04:16 Os11t0525600-01:24 Os11t0525600-03:24 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.102971197 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
19059669-19066451(+) 19066433-19059668(+) 19059831-19066453(-) |
Potential amino acid sequence |
MIKDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFG HSAVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEP PPGQFYFEVDDTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAE SWFRQMDKLIHYVNKDGRVNALYSTPSIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTS RPALKRYVRVMSGYYLAARQLEFFKGRSNSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAK RLSIGYTQAEKLVSSSLSCLSQSGSKSHCPSQTTNFEQCPLLNITYCPPSEMDLSQGKSLVVLV YNSLGWKREDVLRIPVISDSIVVHDSEGREVESQLLPIANASLYMREKHVKAYLGMLPAAKPKF WLAFPVSVPPLGFNTYFISSGKKSASVSLMSTLHSSQGSENSNMQIGQGQLKLQYNAAGALSLY SNSKTQVEANFEQKYKYYIGQDGNGSDPQASGAYIFRPNGTVPIKTDGQVPLTVLRGSILDEVH QQINPWIYQINRVYKGKDYVETEFIVGPIPVDDGNGKELSTEVVTNMATNKTFYTDSSGRDFIK RIRDYRSEWKIEVHQPIAGNYYPVNLGIYVEDGSRELSILVDRSVGGASIKDGQIELMLHRRLL HDDGRGVAEALNETTCFDNQCEGLVIQGKYYLKIDPQGEGARWRRTFGQEIYSPLLIAFAEQDG GNWVNSHVTKFSAMDPAYSLPDNVALLTLQAFFQRWWRQQSDMIKDIVKGLISTGRLELINGGM CMHDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFGHSAVQAYLLGTEVGFDAFYFFR IDYQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEPPPGQFYFEVDDTSPIVQDDPLL FDYNVEQRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAESWFRQMDKLIHYVNKDGRVNAL YSTPSIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTSRPALKRYVRVMSGYYLAARQLE FFKGRSNSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAKRLSIGYTQAEKLVSSSLSCLSQ SGSKSHCPSQTTNFEQCPLLNITYCPPSEMDLSQGKSLVVLVYNSLGWKREDVLRIPVISDSIV VHDSEGREVESQLLPIANASLYMREKHVKAYLGMLPAAKPKFWLAFPVSVPPLGFNTYFISSGK KSASVSLMSTLHSSQGSENSNMQIGQGQLKLQYNAAGALSLYSNSKTQVEANFEQKYKYYIGQD GNGSDPQASGAYIFRPNGTVPIKTDGQVPLTVLRGSILDEVHQQINPWIYQINRVYKGKDYVET EFIVGPIPVDDGNGKELSTEVVTNMATNKTFYTDSSGRDFIKRIRDYRSEWKIEVHQPIAGNYY PVNLGIYVEDGSRELSILVDRSVGGASIKDGQIELMLHRRLLHDDGRGVAEALNETTCFDNQCE GLVIQGKYYLKIDPQGEGARWRRTFGQEIYSPLLIAFAEQDGGNWVNSHVTKFSAMDPAYSLPD NVALLTLQAFFQRWWRQQSDMIKDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHR FIKEEFGQIPRIGWQIDPFGHSAVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGS KTFGSSADIFAGIFPKNYEPPPGQFYFEVDDTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQANI TRTNHVMFTMGTDFKYQYAESWFRQMDKLIHYVNKDGRVNALYSTPSIYTDAKHAENVPWPLKT NDFFPYADNPNAYWTGYFTSRPALKRYVRVMSGYYLAARQLEFFKGRSNSDLTTDSLADALALA QHHDAVTGTEKQHVANDYAKRLSIGYTQAEKLVSSSLSCLSQSGSKSHCPSQTTNFEQCPLLNI TYCPPSEMDLSQGKSLVVLVYNSLGWKREDVLRIPVISDSIVVHDSEGREVESQLLPIANASLY MREKHVKAYLGMLPAAKPKFWLAFPVSVPPLGFNTYFISSGKKSASVSLMSTLHSSQGSENSNM QIGQGQLKLQYNAAGALSLYSNSKTQVEANFEQKYKYYIGQDGNGSDPQASGAYIFRPNGTVPI KTDGQVPLTVLRGSILDEVHQQINPWIYQINRVYKGKDYVETEFIVGPIPVDDGNGKELSTEVV TNMATNKTFYTDSSGRDFIKRIRDYRSEWKIEVHQPIAGNYYPVNLGIYVEDGSRELSILVDRS VGGASIKDGQIELMLHRRLLHDDGRGVAEALNETTCFDNQCEGLVIQGKYYLKIDPQGEGARWR RTFGQEIYSPLLIAFAEQDGGNWVNSHVTKFSAMDPAYSLPDNVALLTLQAFFQRWWRQQSDMI KDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFGHS AVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEPPP GQFYFEVDDTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAESW FRQMDKLIHYVNKDGRVNALYSTPSIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTSRP ALKRYVRVMSGYYLAARQLEFFKGRSNSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAKRL SIGYTQAEKLVSSSLSCLSQSGSKSHCPSQTTNFEQCPLLNITYCPPSEMDLSQGKSLVVLVYN SLGWKREDVLRIPVISDSIVVHDSEGREVESQLLPIANASLYMREKHVKAYLGMLPAAKPKFWL AFPVSVPPLGFNTYFISSGKKSASVSLMSTLHSSQGSENSNMQIGQGQLKLQYNAAGALSLYSN SKTQVEANFEQKYKYYIGQDGNGSDPQASGAYIFRPNGTVPIKTDGQVPLTVLRGSILDEVHQQ INPWIYQINRVYKGKDYVETEFIVGPIPVDDGNGKELSTEVVTNMATNKTFYTDSSGRDFIKRI RDYRSEWKIEVHQPIAGNYYPVNLGIYVEDGSRELSILVDRSVGGASIKDGQIELMLHRRLLHD DGRGVAEALNETTCFDNQCEGLVIQGKYYLKIDPQGEGARWRRTFGQEIYSPLLIAFAEQDGGN WVNSHVTKFSAMDPAYSLPDNVALLTLQ(+) MLHCLLFRHSSRDGGDSRAT*(+) MHIPPFINSNRPVLMSPFTISLIMSLCCLHHLWKNA*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |