Plant Circular RNA Database

Detail information of Os11g0525600_circ_g.6

			
						 General Information
					
						CircRNA Name
						Os11g0525600_circ_g.6
					
						ID in PlantcircBase
						osa_circ_009461
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr11: 19059632-19066454  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os11g0525600						
					
						Parent gene annotation
						
							Similar to Alpha-mannosidase. (Os11t0525600-01);Similar to Alpha
-mannosidase. (Os11t0525600-02);Similar to predicted protein. (O
s11t0525600-03);Similar to predicted protein. (Os11t0525600-04);
Similar to predicted protein. (Os11t0525600-05)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os11g0525600_circ_g.2 Os11g0525600_circ_g.3 Os11g0525600_circ_g.4 Os11g0525600_circ_g.5 Os11g0525600_circ_g.7 Os11g0525600_circ_g.8 Os11g0525600_circ_g.9 Os11g0525600_circ_g.10 Os11g0525600_circ_g.11 Os11g0525600_circ_g.12 Os11g0525600_circ_g.13 Os11g0525600_circ_g.14 Os11g0525600_circ_g.15 Os11g0525600_circ_g.16 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os11t0525600-05:12
Os11t0525600-02:24
Os11t0525600-04:16
Os11t0525600-01:24
Os11t0525600-03:24

General Information
CircRNA Name	Os11g0525600_circ_g.6
ID in PlantcircBase	osa_circ_009461
Alias	NA
Organism	Oryza sativa
Position	chr11: 19059632-19066454 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os11g0525600
Parent gene annotation	Similar to Alpha-mannosidase. (Os11t0525600-01);Similar to Alpha -mannosidase. (Os11t0525600-02);Similar to predicted protein. (O s11t0525600-03);Similar to predicted protein. (Os11t0525600-04); Similar to predicted protein. (Os11t0525600-05)
Parent gene strand	+
Alternative splicing	Os11g0525600_circ_g.2 Os11g0525600_circ_g.3 Os11g0525600_circ_g.4 Os11g0525600_circ_g.5 Os11g0525600_circ_g.7 Os11g0525600_circ_g.8 Os11g0525600_circ_g.9 Os11g0525600_circ_g.10 Os11g0525600_circ_g.11 Os11g0525600_circ_g.12 Os11g0525600_circ_g.13 Os11g0525600_circ_g.14 Os11g0525600_circ_g.15 Os11g0525600_circ_g.16
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os11t0525600-05:12 Os11t0525600-02:24 Os11t0525600-04:16 Os11t0525600-01:24 Os11t0525600-03:24

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							TCAGGATGGAGGTAATTGGGTGAATTCACACGTTACAAAATTCTCTGCAATGGATCCGGCCTAC
AGCTTGCCTGATAATGTTGCATTGCTTACTCTTCAGgcattcttccagagatggtggagacagc
agagcgacatgattaaggatatagtgaaggggctcatcagcactggacgattggaattaatgta
gggtttaa

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

Sequences
Splice junction sequence	TCAGGATGGAGGTAATTGGGTGAATTCACACGTTACAAAATTCTCTGCAATGGATCCGGCCTAC AGCTTGCCTGATAATGTTGCATTGCTTACTCTTCAGgcattcttccagagatggtggagacagc agagcgacatgattaaggatatagtgaaggggctcatcagcactggacgattggaattaatgta gggtttaa
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.102971197

Conservation Information
Conserved circRNAs	NA
PMCS	0.102971197

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							19059669-19066451(+)
19066433-19059668(+)
19059831-19066453(-)
						
					

						Potential amino acid sequence
						
							MIKDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFG
HSAVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEP
PPGQFYFEVDDTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAE
SWFRQMDKLIHYVNKDGRVNALYSTPSIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTS
RPALKRYVRVMSGYYLAARQLEFFKGRSNSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAK
RLSIGYTQAEKLVSSSLSCLSQSGSKSHCPSQTTNFEQCPLLNITYCPPSEMDLSQGKSLVVLV
YNSLGWKREDVLRIPVISDSIVVHDSEGREVESQLLPIANASLYMREKHVKAYLGMLPAAKPKF
WLAFPVSVPPLGFNTYFISSGKKSASVSLMSTLHSSQGSENSNMQIGQGQLKLQYNAAGALSLY
SNSKTQVEANFEQKYKYYIGQDGNGSDPQASGAYIFRPNGTVPIKTDGQVPLTVLRGSILDEVH
QQINPWIYQINRVYKGKDYVETEFIVGPIPVDDGNGKELSTEVVTNMATNKTFYTDSSGRDFIK
RIRDYRSEWKIEVHQPIAGNYYPVNLGIYVEDGSRELSILVDRSVGGASIKDGQIELMLHRRLL
HDDGRGVAEALNETTCFDNQCEGLVIQGKYYLKIDPQGEGARWRRTFGQEIYSPLLIAFAEQDG
GNWVNSHVTKFSAMDPAYSLPDNVALLTLQAFFQRWWRQQSDMIKDIVKGLISTGRLELINGGM
CMHDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFGHSAVQAYLLGTEVGFDAFYFFR
IDYQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEPPPGQFYFEVDDTSPIVQDDPLL
FDYNVEQRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAESWFRQMDKLIHYVNKDGRVNAL
YSTPSIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTSRPALKRYVRVMSGYYLAARQLE
FFKGRSNSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAKRLSIGYTQAEKLVSSSLSCLSQ
SGSKSHCPSQTTNFEQCPLLNITYCPPSEMDLSQGKSLVVLVYNSLGWKREDVLRIPVISDSIV
VHDSEGREVESQLLPIANASLYMREKHVKAYLGMLPAAKPKFWLAFPVSVPPLGFNTYFISSGK
KSASVSLMSTLHSSQGSENSNMQIGQGQLKLQYNAAGALSLYSNSKTQVEANFEQKYKYYIGQD
GNGSDPQASGAYIFRPNGTVPIKTDGQVPLTVLRGSILDEVHQQINPWIYQINRVYKGKDYVET
EFIVGPIPVDDGNGKELSTEVVTNMATNKTFYTDSSGRDFIKRIRDYRSEWKIEVHQPIAGNYY
PVNLGIYVEDGSRELSILVDRSVGGASIKDGQIELMLHRRLLHDDGRGVAEALNETTCFDNQCE
GLVIQGKYYLKIDPQGEGARWRRTFGQEIYSPLLIAFAEQDGGNWVNSHVTKFSAMDPAYSLPD
NVALLTLQAFFQRWWRQQSDMIKDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHR
FIKEEFGQIPRIGWQIDPFGHSAVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGS
KTFGSSADIFAGIFPKNYEPPPGQFYFEVDDTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQANI
TRTNHVMFTMGTDFKYQYAESWFRQMDKLIHYVNKDGRVNALYSTPSIYTDAKHAENVPWPLKT
NDFFPYADNPNAYWTGYFTSRPALKRYVRVMSGYYLAARQLEFFKGRSNSDLTTDSLADALALA
QHHDAVTGTEKQHVANDYAKRLSIGYTQAEKLVSSSLSCLSQSGSKSHCPSQTTNFEQCPLLNI
TYCPPSEMDLSQGKSLVVLVYNSLGWKREDVLRIPVISDSIVVHDSEGREVESQLLPIANASLY
MREKHVKAYLGMLPAAKPKFWLAFPVSVPPLGFNTYFISSGKKSASVSLMSTLHSSQGSENSNM
QIGQGQLKLQYNAAGALSLYSNSKTQVEANFEQKYKYYIGQDGNGSDPQASGAYIFRPNGTVPI
KTDGQVPLTVLRGSILDEVHQQINPWIYQINRVYKGKDYVETEFIVGPIPVDDGNGKELSTEVV
TNMATNKTFYTDSSGRDFIKRIRDYRSEWKIEVHQPIAGNYYPVNLGIYVEDGSRELSILVDRS
VGGASIKDGQIELMLHRRLLHDDGRGVAEALNETTCFDNQCEGLVIQGKYYLKIDPQGEGARWR
RTFGQEIYSPLLIAFAEQDGGNWVNSHVTKFSAMDPAYSLPDNVALLTLQAFFQRWWRQQSDMI
KDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFGHS
AVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEPPP
GQFYFEVDDTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAESW
FRQMDKLIHYVNKDGRVNALYSTPSIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTSRP
ALKRYVRVMSGYYLAARQLEFFKGRSNSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAKRL
SIGYTQAEKLVSSSLSCLSQSGSKSHCPSQTTNFEQCPLLNITYCPPSEMDLSQGKSLVVLVYN
SLGWKREDVLRIPVISDSIVVHDSEGREVESQLLPIANASLYMREKHVKAYLGMLPAAKPKFWL
AFPVSVPPLGFNTYFISSGKKSASVSLMSTLHSSQGSENSNMQIGQGQLKLQYNAAGALSLYSN
SKTQVEANFEQKYKYYIGQDGNGSDPQASGAYIFRPNGTVPIKTDGQVPLTVLRGSILDEVHQQ
INPWIYQINRVYKGKDYVETEFIVGPIPVDDGNGKELSTEVVTNMATNKTFYTDSSGRDFIKRI
RDYRSEWKIEVHQPIAGNYYPVNLGIYVEDGSRELSILVDRSVGGASIKDGQIELMLHRRLLHD
DGRGVAEALNETTCFDNQCEGLVIQGKYYLKIDPQGEGARWRRTFGQEIYSPLLIAFAEQDGGN
WVNSHVTKFSAMDPAYSLPDNVALLTLQ(+)
MLHCLLFRHSSRDGGDSRAT*(+)
MHIPPFINSNRPVLMSPFTISLIMSLCCLHHLWKNA*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	19059669-19066451(+) 19066433-19059668(+) 19059831-19066453(-)
Potential amino acid sequence	MIKDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFG HSAVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEP PPGQFYFEVDDTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAE SWFRQMDKLIHYVNKDGRVNALYSTPSIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTS RPALKRYVRVMSGYYLAARQLEFFKGRSNSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAK RLSIGYTQAEKLVSSSLSCLSQSGSKSHCPSQTTNFEQCPLLNITYCPPSEMDLSQGKSLVVLV YNSLGWKREDVLRIPVISDSIVVHDSEGREVESQLLPIANASLYMREKHVKAYLGMLPAAKPKF WLAFPVSVPPLGFNTYFISSGKKSASVSLMSTLHSSQGSENSNMQIGQGQLKLQYNAAGALSLY SNSKTQVEANFEQKYKYYIGQDGNGSDPQASGAYIFRPNGTVPIKTDGQVPLTVLRGSILDEVH QQINPWIYQINRVYKGKDYVETEFIVGPIPVDDGNGKELSTEVVTNMATNKTFYTDSSGRDFIK RIRDYRSEWKIEVHQPIAGNYYPVNLGIYVEDGSRELSILVDRSVGGASIKDGQIELMLHRRLL HDDGRGVAEALNETTCFDNQCEGLVIQGKYYLKIDPQGEGARWRRTFGQEIYSPLLIAFAEQDG GNWVNSHVTKFSAMDPAYSLPDNVALLTLQAFFQRWWRQQSDMIKDIVKGLISTGRLELINGGM CMHDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFGHSAVQAYLLGTEVGFDAFYFFR IDYQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEPPPGQFYFEVDDTSPIVQDDPLL FDYNVEQRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAESWFRQMDKLIHYVNKDGRVNAL YSTPSIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTSRPALKRYVRVMSGYYLAARQLE FFKGRSNSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAKRLSIGYTQAEKLVSSSLSCLSQ SGSKSHCPSQTTNFEQCPLLNITYCPPSEMDLSQGKSLVVLVYNSLGWKREDVLRIPVISDSIV VHDSEGREVESQLLPIANASLYMREKHVKAYLGMLPAAKPKFWLAFPVSVPPLGFNTYFISSGK KSASVSLMSTLHSSQGSENSNMQIGQGQLKLQYNAAGALSLYSNSKTQVEANFEQKYKYYIGQD GNGSDPQASGAYIFRPNGTVPIKTDGQVPLTVLRGSILDEVHQQINPWIYQINRVYKGKDYVET EFIVGPIPVDDGNGKELSTEVVTNMATNKTFYTDSSGRDFIKRIRDYRSEWKIEVHQPIAGNYY PVNLGIYVEDGSRELSILVDRSVGGASIKDGQIELMLHRRLLHDDGRGVAEALNETTCFDNQCE GLVIQGKYYLKIDPQGEGARWRRTFGQEIYSPLLIAFAEQDGGNWVNSHVTKFSAMDPAYSLPD NVALLTLQAFFQRWWRQQSDMIKDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHR FIKEEFGQIPRIGWQIDPFGHSAVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGS KTFGSSADIFAGIFPKNYEPPPGQFYFEVDDTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQANI TRTNHVMFTMGTDFKYQYAESWFRQMDKLIHYVNKDGRVNALYSTPSIYTDAKHAENVPWPLKT NDFFPYADNPNAYWTGYFTSRPALKRYVRVMSGYYLAARQLEFFKGRSNSDLTTDSLADALALA QHHDAVTGTEKQHVANDYAKRLSIGYTQAEKLVSSSLSCLSQSGSKSHCPSQTTNFEQCPLLNI TYCPPSEMDLSQGKSLVVLVYNSLGWKREDVLRIPVISDSIVVHDSEGREVESQLLPIANASLY MREKHVKAYLGMLPAAKPKFWLAFPVSVPPLGFNTYFISSGKKSASVSLMSTLHSSQGSENSNM QIGQGQLKLQYNAAGALSLYSNSKTQVEANFEQKYKYYIGQDGNGSDPQASGAYIFRPNGTVPI KTDGQVPLTVLRGSILDEVHQQINPWIYQINRVYKGKDYVETEFIVGPIPVDDGNGKELSTEVV TNMATNKTFYTDSSGRDFIKRIRDYRSEWKIEVHQPIAGNYYPVNLGIYVEDGSRELSILVDRS VGGASIKDGQIELMLHRRLLHDDGRGVAEALNETTCFDNQCEGLVIQGKYYLKIDPQGEGARWR RTFGQEIYSPLLIAFAEQDGGNWVNSHVTKFSAMDPAYSLPDNVALLTLQAFFQRWWRQQSDMI KDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFGHS AVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEPPP GQFYFEVDDTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAESW FRQMDKLIHYVNKDGRVNALYSTPSIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTSRP ALKRYVRVMSGYYLAARQLEFFKGRSNSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAKRL SIGYTQAEKLVSSSLSCLSQSGSKSHCPSQTTNFEQCPLLNITYCPPSEMDLSQGKSLVVLVYN SLGWKREDVLRIPVISDSIVVHDSEGREVESQLLPIANASLYMREKHVKAYLGMLPAAKPKFWL AFPVSVPPLGFNTYFISSGKKSASVSLMSTLHSSQGSENSNMQIGQGQLKLQYNAAGALSLYSN SKTQVEANFEQKYKYYIGQDGNGSDPQASGAYIFRPNGTVPIKTDGQVPLTVLRGSILDEVHQQ INPWIYQINRVYKGKDYVETEFIVGPIPVDDGNGKELSTEVVTNMATNKTFYTDSSGRDFIKRI RDYRSEWKIEVHQPIAGNYYPVNLGIYVEDGSRELSILVDRSVGGASIKDGQIELMLHRRLLHD DGRGVAEALNETTCFDNQCEGLVIQGKYYLKIDPQGEGARWRRTFGQEIYSPLLIAFAEQDGGN WVNSHVTKFSAMDPAYSLPDNVALLTLQ(+) MLHCLLFRHSSRDGGDSRAT(+) MHIPPFINSNRPVLMSPFTISLIMSLCCLHHLWKNA(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os11g0525600_circ_g.6

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