Detail information of Os11g0525600_circ_g.8


General Information
CircRNA Name Os11g0525600_circ_g.8
ID in PlantcircBase osa_circ_009463
Alias NA
Organism Oryza sativa
Position chr11: 19062210-19063564  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0525600
Parent gene annotation Similar to Alpha-mannosidase. (Os11t0525600-01);Similar to Alpha
-mannosidase. (Os11t0525600-02);Similar to predicted protein. (O
s11t0525600-03);Similar to predicted protein. (Os11t0525600-04);
Similar to predicted protein. (Os11t0525600-05)
Parent gene strand +
Alternative splicing Os11g0525600_circ_g.2 Os11g0525600_circ_g.3 Os11g0525600_circ_g.4 Os11g0525600_circ_g.5 Os11g0525600_circ_g.6 Os11g0525600_circ_g.7 Os11g0525600_circ_g.9 Os11g0525600_circ_g.10 Os11g0525600_circ_g.11 Os11g0525600_circ_g.12 Os11g0525600_circ_g.13 Os11g0525600_circ_g.14 Os11g0525600_circ_g.15 Os11g0525600_circ_g.16
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0525600-02:5
Os11t0525600-05:3
Os11t0525600-03:5
Os11t0525600-01:5
Os11t0525600-04:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGTACTCTAACACCATTAACACATTCCAAGGTTGAAGCAAATTTTGAGCAGAAGTACAAGTAT
TACATAGGACAGGATGGAAATGGAAGTGATCCTCAGtgtccgctcctaaatattacatattgcc
ccccttccgagatggacctttctcaagggaaaagtttggtgagttctgttcttaacacaacaca
caactctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGTCCGCTCCTAAATATTACATATTGCCCCCCTTCCGAGATGGACCTTTCTCAAGGGAAAAGTT
TGGTGAGTTCTGTTCTTAACACAACACACAACTCTTTTCAAGATGAACTACCTGTTTGTAGTTG
ATTGATATTTTTAAGAAAAAAACATATAGCTTTATTTTTTTCCCACCTTTTATGTTACAGGTTG
TGCTTGTGTACAACTCTCTTGGGTGGAAACGGGAGGATGTCCTTCGCATACCGGTATGCAAATG
TTATTCCCTGAAAAGCAACATATTTTGTTGTTTTAATTTGCTCGGCATATATCAATCGGAATTT
TCTGCTTGTGCATAAGATGTGTGATGCACTGATGCATTGTGCTACTACCATGAAACTGCTTTTG
CTTTAGATGGTTAATTAATATGCCAATTTATCAACAGGTCATCAGTGACTCAATTGTTGTTCAT
GATTCTGAGGGAAGAGAAGTTGAATCACAACTTCTGCCTATAGCTAATGCATCTTTGTACATGC
GGGAGAAACATGTCAAGGCTTACCTAGGCATGTTACCAGCTGCAAAACCCAAGTTTTGGCTTGC
TTTTCCAGTTTCTGTACCACCTCTTGGTTTCAATACGTACTTTATATCAAGCGGGAAGAAATCA
GGTGAATTAATTTCTTTCTTCACCAAAACTTAGTTAAGAGTTGCCATGAAGTTTGACGATTTTT
CTTAATTCACTGCATATATTGCAGCATCAGTCTCTTTGATGTCCACTCTGCACTCATCTCAAGG
AAGTGAAAATAGTAACATGCAAATTGGGCAAGGACAGTTGAAACTTCAATACAATGCAGCTGGA
GCATTATCTCTGTACTCCAATAGTAAGACCCAGGTAATGTGCCAAAGGTTAATCACTACCTCCA
ATCTGGAACCTTTTCTTCTCTTACAGGACTTGCCTTTGCTTCCATTGTAAAGGTATAAAGTAGT
GTACTCGTAAGATTTGTTGTTGCTAGTAGCTAGCTAAGAAGTACTCCCTCCATCCCATTTTAAG
TGCAGCCATGATTTTCCGTGCACAACTTTGACCGTTCGTCTTATTTGAAATTGTTTTGAAAAAT
TTAAAATACATAAGTCACACATAAAGTACTATTCATATTTTATCATCTCATAACAATAAAAATA
CTAATTATAAAACGGAGGGAGTAAGAACCAGTATGTTATTTGCCCTAGAAAACCATGTGTTCAT
TGCTTCTTGCTTTAATTATTGCATATGATCTAAACTCACTTGTACTCTAACACCATTAACACAT
TCCAAGGTTGAAGCAAATTTTGAGCAGAAGTACAAGTATTACATAGGACAGGATGGAAATGGAA
GTGATCCTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.137434028
Functional Information
Coding potential Y
Potential coding position 19062250-19063561(+)
Potential amino acid sequence MDLSQGKSLVVLVYNSLGWKREDVLRIPVISDSIVVHDSEGREVESQLLPIANASLYMREKHVK
AYLGMLPAAKPKFWLAFPVSVPPLGFNTYFISSGKKSASVSLMSTLHSSQGSENSNMQIGQGQL
KLQYNAAGALSLYSNSKTQVEANFEQKYKYYIGQDGNGSDPQCPLLNITYCPPSEMDLSQGKSL
VVLVYNSLGWKREDVLRIPVISDSIVVHDSEGREVESQLLPIANASLYMREKHVKAYLGMLPAA
KPKFWLAFPVSVPPLGFNTYFISSGKKSASVSLMSTLHSSQGSENSNMQIGQGQLKLQYNAAGA
LSLYSNSKTQVEANFEQKYKYYIGQDGNGSDPQCPLLNITYCPPSEMDLSQGKSLVVLVYNSLG
WKREDVLRIPVISDSIVVHDSEGREVESQLLPIANASLYMREKHVKAYLGMLPAAKPKFWLAFP
VSVPPLGFNTYFISSGKKSASVSLMSTLHSSQGSENSNMQIGQGQLKLQYNAAGALSLYSNSKT
QVEANFEQKYKYYIGQDGNGSDPQCPLLNITYCPPSEMDLSQGKSLVVLVYNSLGWKREDVLRI
PVISDSIVVHDSEGREVESQLLPIANASLYMREKHVKAYLGMLPAAKPKFWLAFPVSVPPLGFN
TYFISSGKKSASVSLMSTLHSSQGSENSNMQIGQGQLKLQYNAAGALSLYSNSKTQVEANFEQK
YKYYIGQDGNGSDPQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017