Detail information of Os11g0525600_circ_g.7


General Information
CircRNA Name Os11g0525600_circ_g.7
ID in PlantcircBase osa_circ_009462
Alias NA
Organism Oryza sativa
Position chr11: 19062059-19062188  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os11g0525600
Parent gene annotation Similar to Alpha-mannosidase. (Os11t0525600-01);Similar to Alpha
-mannosidase. (Os11t0525600-02);Similar to predicted protein. (O
s11t0525600-03);Similar to predicted protein. (Os11t0525600-04);
Similar to predicted protein. (Os11t0525600-05)
Parent gene strand +
Alternative splicing Os11g0525600_circ_g.2 Os11g0525600_circ_g.3 Os11g0525600_circ_g.4 Os11g0525600_circ_g.5 Os11g0525600_circ_g.6 Os11g0525600_circ_g.8 Os11g0525600_circ_g.9 Os11g0525600_circ_g.10 Os11g0525600_circ_g.11 Os11g0525600_circ_g.12 Os11g0525600_circ_g.13 Os11g0525600_circ_g.14 Os11g0525600_circ_g.15 Os11g0525600_circ_g.16
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   AT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGTAATGCGTGGGGTCTGCTTTCTCAACATGCATTGTAATTATACATGATGCAGTATTTCCTT
Tgttggtttatatctttgtgtgtgtgagtgtctaccctggcactggttagagccaactcccttc
cc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 130
Transcript exons: 19062059-19062188
GTTGGTTTATATCTTTGTGTGTGTGAGTGTCTACCCTGGCACTGGTTAGAGCCAACTCCCTTCC
CCTGTAATGCGTGGGGTCTGCTTTCTCAACATGCATTGTAATTATACATGATGCAGTATTTCCT
TT

Genomic sequence GTTGGTTTATATCTTTGTGTGTGTGAGTGTCTACCCTGGCACTGGTTAGAGCCAACTCCCTTCC
CCTGTAATGCGTGGGGTCTGCTTTCTCAACATGCATTGTAATTATACATGATGCAGTATTTCCT
TT
Conservation Information
Conserved circRNAs NA
PMCS 0.242435897
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017