Detail information of Os11g0525600_circ_g.9


General Information
CircRNA Name Os11g0525600_circ_g.9
ID in PlantcircBase osa_circ_009464
Alias NA
Organism Oryza sativa
Position chr11: 19063075-19063471  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os11g0525600
Parent gene annotation Similar to Alpha-mannosidase. (Os11t0525600-01);Similar to Alpha
-mannosidase. (Os11t0525600-02);Similar to predicted protein. (O
s11t0525600-03);Similar to predicted protein. (Os11t0525600-04);
Similar to predicted protein. (Os11t0525600-05)
Parent gene strand +
Alternative splicing Os11g0525600_circ_g.2 Os11g0525600_circ_g.3 Os11g0525600_circ_g.4 Os11g0525600_circ_g.5 Os11g0525600_circ_g.6 Os11g0525600_circ_g.7 Os11g0525600_circ_g.8 Os11g0525600_circ_g.10 Os11g0525600_circ_g.11 Os11g0525600_circ_g.12 Os11g0525600_circ_g.13 Os11g0525600_circ_g.14 Os11g0525600_circ_g.15 Os11g0525600_circ_g.16
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACGGAGGGAGTAAGAACCAGTATGTTATTTGCCCTAGAAAACCATGTGTTCATTGCTTCTTGC
TTTAATTATTGCATATGATCTAAACTCACTTGTACTgtaatgtgccaaaggttaatcactacct
ccaatctggaaccttttcttctcttacaggacttgcctttgcttccattgtaaaggtataaagt
agtgtact
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 397
Transcript exons: 19063075-19063471
GTAATGTGCCAAAGGTTAATCACTACCTCCAATCTGGAACCTTTTCTTCTCTTACAGGACTTGC
CTTTGCTTCCATTGTAAAGGTATAAAGTAGTGTACTCGTAAGATTTGTTGTTGCTAGTAGCTAG
CTAAGAAGTACTCCCTCCATCCCATTTTAAGTGCAGCCATGATTTTCCGTGCACAACTTTGACC
GTTCGTCTTATTTGAAATTGTTTTGAAAAATTTAAAATACATAAGTCACACATAAAGTACTATT
CATATTTTATCATCTCATAACAATAAAAATACTAATTATAAAACGGAGGGAGTAAGAACCAGTA
TGTTATTTGCCCTAGAAAACCATGTGTTCATTGCTTCTTGCTTTAATTATTGCATATGATCTAA
ACTCACTTGTACT

Genomic sequence GTAATGTGCCAAAGGTTAATCACTACCTCCAATCTGGAACCTTTTCTTCTCTTACAGGACTTGC
CTTTGCTTCCATTGTAAAGGTATAAAGTAGTGTACTCGTAAGATTTGTTGTTGCTAGTAGCTAG
CTAAGAAGTACTCCCTCCATCCCATTTTAAGTGCAGCCATGATTTTCCGTGCACAACTTTGACC
GTTCGTCTTATTTGAAATTGTTTTGAAAAATTTAAAATACATAAGTCACACATAAAGTACTATT
CATATTTTATCATCTCATAACAATAAAAATACTAATTATAAAACGGAGGGAGTAAGAACCAGTA
TGTTATTTGCCCTAGAAAACCATGTGTTCATTGCTTCTTGCTTTAATTATTGCATATGATCTAA
ACTCACTTGTACT
Conservation Information
Conserved circRNAs osi_circ_009074
PMCS 0.350281948
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017