Detail information of BGIOSGA014376_circ_g.10


General Information
CircRNA Name BGIOSGA014376_circ_g.10
ID in PlantcircBase osi_circ_005714
Alias 4:29775148|29777536
Organism Oryza sativa ssp. indica
Position chr4: 29775148-29777536  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA014376
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014376_circ_g.1 BGIOSGA014376_circ_g.2 BGIOSGA014376_circ_g.3 BGIOSGA014376_circ_g.4 BGIOSGA014376_circ_g.5 BGIOSGA014376_circ_g.6 BGIOSGA014376_circ_g.7 BGIOSGA014376_circ_g.8 BGIOSGA014376_circ_g.9
Support reads NA
Tissues leaf
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA014376-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCGCCCCAAAGTCCAAGCCGAACCATATAGCCCAAATTCCGTGGTTCTGATGCACCAGTTGC
CGAGCAATAAACAACCCGTGCCTCAGGTAGCTTTTCatggagagtaatcatcactgtcatcatc
actcacttctaccagttttgctacttttctaacacgtcctttaaatgatacatctggggcagaa
tgccgctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGGAGAGTAATCATCACTGTCATCATCACTCACTTCTACCAGTTTTGCTACTTTTCTAACACG
TCCTTTAAATGATACATCTGGGGCAGAATGCCGCTTACGGTGAATTTCTGTGACTTTTTCTTCA
CCTAAAAAAATATACACAAAAATAATAATCAATAGTAGAAGACCAGGCAACTAGAGCCGTATGA
GTTATAAACAAACAAGATGAGATAATGTAAGTGAATATGCAAAATAGCATTTTCTATAGGATAC
TAAGCCCAATTTCATAAGTGAAAAATGGCCAAATTCCAATAAATTTGCTTTTGTTTATGCAAGC
AGAAAGGGCTGACAAAATATGAGATGTACAGTTTATTAGGAAAAGAGAAAGACCATTTGACTTT
ATACTACCTTCTAGGTAGTAGCATTTCACTTAGTAGACATGGAAATTGCATTAAAGATATGGTA
AAACTTGAGATTAGTATGATGAAACAGTCAGCACGGACCTTGTTGAAAAGAATCAGGCTTCGGA
GGTAGAGGGTAATTTTCTTCTACCAGCTTTAGAAGCAGCTCCCGAGGACCAGAAACAAAGTCTT
CCATTTCAACACCCTGGTTCATATTGGAAGCAATCAATAATTCGGAGTATTAGGTCAGTTAGGA
AGGCGCTACAATATGATGAAGAGACAAATAAAATGTTCCTTTGGAAATATAAGCTCACATATTT
TGTGATAGCTTCTTCTGTTCGAGCCTCTCCAGTGCTCTGAAGACCAACCACCACACACTTATTC
TCTGCCAGGGCCTCCTTAGCCAACTTCACAACAGCAGGTACTTTTGCAGACATGCACATATGCC
TGAAGAAACGCTGTATAACATAGAAAATCAATTTTGCAAGAATAATTAACCACCCTACTCTTTA
TTTCATATTAGAAGTTTACTTGTCAACTTTTGAATATGCTAAATCAGGGGTAATATTTATGCTA
GAAATGCATTCATGGAACTGAGAAGGATGCAAATATTGCAAAGTAAAAACAAAAGGTTTGATAG
AAATTTATTTCAGAATATGTAAGGAGGTAACACCTGATGGCTAGCCCAATATAGCCGCCATATT
TGATTTGAAATGCCTTCTGTAAATGATTCACCTGCTGATAGGAGCTCAAGGCGGAACTCAGCCC
AAAATTCGGCTGCCTTTCTGTACATATTCTGCATTACCAATAAGATGGAAACTTTACCATGAGC
TATACGATAGGAAAAACCAACTAGCTTAAGTTTAATATTAATATTGTAACAATGATCAATGCAT
AGGAATAATTCAAAGAATGTTTTTTCTTGATAAGCAATCAGAGTATGAAAGAGAACACTGATAC
AGAGAAGACACAAAAGAGCAAAGCAATAATGCATCTTGAAATAAAGTAAAGTAGCAGAAAGTCA
CTTTTTACCATCATTCTTTCCTCAAGGGGAGCCTCCACAATATCAAAATCAACCCCCTTATAAC
TTAGTGTGCGGCAAACATACATACCCCTGCAACAAATTTTATAGAGATGGTACTCAATAAATCA
TTCTGGGGAAAAACACAAGCAAGAGACAATACTTGAACCAAAAAAGGTTTCGAAGGCTACTAGC
CAGTTTTCCATATACAGAAAAAACATTGGACAAAACATATTAGTGGCAACAGTTACCCATTGCA
GATGGACGCTTTCATGCCCATGGAACTAAAGATCTTGGAAAAAAAAATGCTAACCTGGCTTTCA
TGTCCATGGCAACAAGTTCAAGAGCGCCCACACCACCTTTCTCGAGAGATCCTATGTTTTTTTT
CCATAAAATGTGAGTAATGATAGCATTTAGTATGACGTCACATGCAATGCTTCAGTTACCAACT
ACACAACACCCAAGAAAAATCAAAACTGGAGTATACAACCCCGAAAACCATAACTACTAATTGC
CCTAAACAAGTGTTGGAAGCCCAGCAATGGAGACGGGGCACACTCAATACATGTAAATTTATAA
TGCAGTTTGAATTACTTGGGGAAGCAGAAACCAAATACAGTGCTTCACAACTCTACTAGTATGA
CTCAACCATAAGTTTCTGGTGATCCCCCACAAAATAGTCTAGTACAGCCACAATTTATAGCCCA
TTACTAGGGTTCAGTATTGACCAGCATGCTTGATGCCAACATGAAAAGCCAAGCTGTTCTTTTG
TATCGAAGTTAAAATAAATGCAAATAATAAATAATAAAAGAAAAGAAGGATTCAAGTACAAATA
GGTTAAAGAAGTAGACCTAAAAATTGCGCAAAATTCTGAAATGATGTTCCATCGCCCCAAAGTC
CAAGCCGAACCATATAGCCCAAATTCCGTGGTTCTGATGCACCAGTTGCCGAGCAATAAACAAC
CCGTGCCTCAGGTAGCTTTTC
Conservation Information
Conserved circRNAs osa_circ_025165*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021