Detail information of BGIOSGA014376_circ_g.9


General Information
CircRNA Name BGIOSGA014376_circ_g.9
ID in PlantcircBase osi_circ_014766
Alias Chr04:31565044_31567433(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 29775147-29777536  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA014376
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014376_circ_g.1 BGIOSGA014376_circ_g.2 BGIOSGA014376_circ_g.3 BGIOSGA014376_circ_g.4 BGIOSGA014376_circ_g.5 BGIOSGA014376_circ_g.6 BGIOSGA014376_circ_g.7 BGIOSGA014376_circ_g.8 BGIOSGA014376_circ_g.10
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered BGIOSGA014376-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCGCCCCAAAGTCCAAGCCGAACCATATAGCCCAAATTCCGTGGTTCTGATGCACCAGTTGC
CGAGCAATAAACAACCCGTGCCTCAGGTAGCTTTTCcatggagagtaatcatcactgtcatcat
cactcacttctaccagttttgctacttttctaacacgtcctttaaatgatacatctggggcaga
atgccgct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATGGAGAGTAATCATCACTGTCATCATCACTCACTTCTACCAGTTTTGCTACTTTTCTAACAC
GTCCTTTAAATGATACATCTGGGGCAGAATGCCGCTTACGGTGAATTTCTGTGACTTTTTCTTC
ACCTAAAAAAATATACACAAAAATAATAATCAATAGTAGAAGACCAGGCAACTAGAGCCGTATG
AGTTATAAACAAACAAGATGAGATAATGTAAGTGAATATGCAAAATAGCATTTTCTATAGGATA
CTAAGCCCAATTTCATAAGTGAAAAATGGCCAAATTCCAATAAATTTGCTTTTGTTTATGCAAG
CAGAAAGGGCTGACAAAATATGAGATGTACAGTTTATTAGGAAAAGAGAAAGACCATTTGACTT
TATACTACCTTCTAGGTAGTAGCATTTCACTTAGTAGACATGGAAATTGCATTAAAGATATGGT
AAAACTTGAGATTAGTATGATGAAACAGTCAGCACGGACCTTGTTGAAAAGAATCAGGCTTCGG
AGGTAGAGGGTAATTTTCTTCTACCAGCTTTAGAAGCAGCTCCCGAGGACCAGAAACAAAGTCT
TCCATTTCAACACCCTGGTTCATATTGGAAGCAATCAATAATTCGGAGTATTAGGTCAGTTAGG
AAGGCGCTACAATATGATGAAGAGACAAATAAAATGTTCCTTTGGAAATATAAGCTCACATATT
TTGTGATAGCTTCTTCTGTTCGAGCCTCTCCAGTGCTCTGAAGACCAACCACCACACACTTATT
CTCTGCCAGGGCCTCCTTAGCCAACTTCACAACAGCAGGTACTTTTGCAGACATGCACATATGC
CTGAAGAAACGCTGTATAACATAGAAAATCAATTTTGCAAGAATAATTAACCACCCTACTCTTT
ATTTCATATTAGAAGTTTACTTGTCAACTTTTGAATATGCTAAATCAGGGGTAATATTTATGCT
AGAAATGCATTCATGGAACTGAGAAGGATGCAAATATTGCAAAGTAAAAACAAAAGGTTTGATA
GAAATTTATTTCAGAATATGTAAGGAGGTAACACCTGATGGCTAGCCCAATATAGCCGCCATAT
TTGATTTGAAATGCCTTCTGTAAATGATTCACCTGCTGATAGGAGCTCAAGGCGGAACTCAGCC
CAAAATTCGGCTGCCTTTCTGTACATATTCTGCATTACCAATAAGATGGAAACTTTACCATGAG
CTATACGATAGGAAAAACCAACTAGCTTAAGTTTAATATTAATATTGTAACAATGATCAATGCA
TAGGAATAATTCAAAGAATGTTTTTTCTTGATAAGCAATCAGAGTATGAAAGAGAACACTGATA
CAGAGAAGACACAAAAGAGCAAAGCAATAATGCATCTTGAAATAAAGTAAAGTAGCAGAAAGTC
ACTTTTTACCATCATTCTTTCCTCAAGGGGAGCCTCCACAATATCAAAATCAACCCCCTTATAA
CTTAGTGTGCGGCAAACATACATACCCCTGCAACAAATTTTATAGAGATGGTACTCAATAAATC
ATTCTGGGGAAAAACACAAGCAAGAGACAATACTTGAACCAAAAAAGGTTTCGAAGGCTACTAG
CCAGTTTTCCATATACAGAAAAAACATTGGACAAAACATATTAGTGGCAACAGTTACCCATTGC
AGATGGACGCTTTCATGCCCATGGAACTAAAGATCTTGGAAAAAAAAATGCTAACCTGGCTTTC
ATGTCCATGGCAACAAGTTCAAGAGCGCCCACACCACCTTTCTCGAGAGATCCTATGTTTTTTT
TCCATAAAATGTGAGTAATGATAGCATTTAGTATGACGTCACATGCAATGCTTCAGTTACCAAC
TACACAACACCCAAGAAAAATCAAAACTGGAGTATACAACCCCGAAAACCATAACTACTAATTG
CCCTAAACAAGTGTTGGAAGCCCAGCAATGGAGACGGGGCACACTCAATACATGTAAATTTATA
ATGCAGTTTGAATTACTTGGGGAAGCAGAAACCAAATACAGTGCTTCACAACTCTACTAGTATG
ACTCAACCATAAGTTTCTGGTGATCCCCCACAAAATAGTCTAGTACAGCCACAATTTATAGCCC
ATTACTAGGGTTCAGTATTGACCAGCATGCTTGATGCCAACATGAAAAGCCAAGCTGTTCTTTT
GTATCGAAGTTAAAATAAATGCAAATAATAAATAATAAAAGAAAAGAAGGATTCAAGTACAAAT
AGGTTAAAGAAGTAGACCTAAAAATTGCGCAAAATTCTGAAATGATGTTCCATCGCCCCAAAGT
CCAAGCCGAACCATATAGCCCAAATTCCGTGGTTCTGATGCACCAGTTGCCGAGCAATAAACAA
CCCGTGCCTCAGGTAGCTTTTC
Conservation Information
Conserved circRNAs osa_circ_025165
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021