Detail information of BGIOSGA014376_circ_g.2


General Information
CircRNA Name BGIOSGA014376_circ_g.2
ID in PlantcircBase osi_circ_005711
Alias 4:29762808|29772882
Organism Oryza sativa ssp. indica
Position chr4: 29762808-29772882  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA014376
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014376_circ_g.1 BGIOSGA014376_circ_g.3 BGIOSGA014376_circ_g.4 BGIOSGA014376_circ_g.5 BGIOSGA014376_circ_g.6 BGIOSGA014376_circ_g.7 BGIOSGA014376_circ_g.8 BGIOSGA014376_circ_g.9 BGIOSGA014376_circ_g.10
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA014376-TA:16
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTACTAAATAATAAGCCATAAGAGTCACCTCCTCTGTGTTACAGATTTGACACATGTGAAACT
CCTCATCAGACTCTGTCGATCCATGATCTGACTCAGctgcttagctagggccttttctattgta
ccccaaactggaagtatgagaccacccaagatgttaacctcttgcaaccttcttcccactgtac
agtagctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 29772840-29772306(-)
29772257-29762816(+)
Potential amino acid sequence MCQICNTEEEKTLLLHCSGCSRHVHPGCLTPPWTGVLTDDWSCYTCKKLEGEENEQDAHVADFS
QRYDAAVEKKKKILDMIRSLDLPNNPLDDIIDQLGGPDNVAEITGRRGMLIRASDGKGVVYQAR
NAKEVSMEMINMHEKQQFMDGKKLISIISEAGSAGVSLHADRRAKNQRRRVHITLELPWSADRA
IQQFGRTHRSNQTSAPQYRLLFTNLGGEKRFASIVAKRLESLGALTQGDRRAGPSLSAFNYDSN
YGKKALTIMYRGIMEQDSFPVVPPGCSDNQSSIQEFIAEAKAALVSVGIIRDAVVCNGKVAGKL
SGRIVDSDMHDVARFLNRLLGLAPKIQNRLFDLFTSILDVVLHNARIEGQLDSGIVDIKAKNVE
MKESPKTVHIDSLSGASTVLFTFTIDRGVTWETAKSMLDERQKDGAGSSNDGFYESKREWMGGR
HFILAFEGSIEGMYKIIRPAIGEALREMPLTELKSKYRKVSSIEKVNKGWQDEYDASSKQCMHG
SKCKVGSYCTVGRRLQEVNILGGLILPVWGTIEKALAKQLSQIMDRQSLMRSFTCVKSVTQRRR
RLCCFIVLVVLDMFTLVV*(-)
MCSMTSHQLIPQSKVVSDNQGEHVENNQNNEATESSPPLCYRFDTCETPHQTLSIHDLTQLLS*
(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021