Detail information of Os04g0340300_circ_g.4


General Information
CircRNA Name Os04g0340300_circ_g.4
ID in PlantcircBase osa_circ_023454
Alias NA
Organism Oryza sativa
Position chr4: 16064346-16067009  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0340300
Parent gene annotation Terpenoid synthase domain containing protein. (Os04t0340300-01)
Parent gene strand -
Alternative splicing Os04g0340300_circ_igg.1 Os04g0340550_circ_g.1 Os04g0340300_circ_g.1 Os04g0340300_circ_g.2 Os04g0340300_circ_igg.3 Os04g0340300_circ_g.5 Os04g0340300_circ_igg.6 Os04g0340300_circ_igg.7 Os04g0340300_circ_ag.1 Os04g0340300_circ_igg.2 Os04g0340300_circ_igg.3 Os04g0340800_circ_g.1 Os04g0341500_circ_igg.1
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0340300-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTAAGTGCATTTTCTTGGCTGTATCATTGTGCGTCTCAAACAGTATACGGACGTCCTGTTTTAG
TTTATCAGCCTTTTCCATCATCCAATCCTCCGATCTctttgtatggcttcattcagcttcctgc
attcctcgatggtggcatgatcatcatatgtgtcatccataaggacaatgaatacaattatctt
ggcaagga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 857
Transcript exons: 16064346-16064564,16065833-16066211,16066751-16067009
CTTTGTATGGCTTCATTCAGCTTCCTGCATTCCTCGATGGTGGCATGATCATCATATGTGTCAT
CCATAAGGACAATGAATACAATTATCTTGGCAAGGATCATCCGTGTGAGTGTTAAGTTTTCTTC
ATAGAACAGCGCATAGGACCAAAGATATGACTCCACTGCACGATCTCTAACATGACTTAGCTCG
ACATATCCATAAAGATCTTTCCACCACTGAGAAAAAGCTTTGAGCTCCTTCAAGTGGACATGCT
GCAGAAGGTTAAATTCCAGCTTTGCAAGATCTAAAAGAACAACAATACATTCTTCCTCCTGTCC
GTACTCCAGCATGTAATGCAACATTTCAACTCTCTTGTAGGTTCTCGGTAATGGTAAGTGTAGG
GCACGGTTGATTTGATTATCTAGAGGGGCCTTGAGCCTACTTCCGTCCCTCATTGATTCGAGGT
GGTGCCTTGCAAAAGACATAGCTTCTTCAAGTTCTGGCTCATCATGGACAAGGAGGTGAGCTGC
ATTGTACAAACTTAATAATGCCCTTGGTTCATCAGCTATTGTATTGATGAACCTCCCATCCTCT
CCTTTGAATTTTTCGAATACATCTGGAGATACCCAAATGCCATGCTCCCTAAGTAAGCGAAAGT
GGAGAGCAACCTCGTGGAGACTAGAGCTAGTGAATTCACTTTCTTTGATGTCACTTATTGCATT
GTTTATCTCATCTTGGAAAAGGTGATCTATTCCAAGACGTTGAACTGCATCTACTAAGTGCATT
TTCTTGGCTGTATCATTGTGCGTCTCAAACAGTATACGGACGTCCTGTTTTAGTTTATCAGCCT
TTTCCATCATCCAATCCTCCGATCT

Genomic sequence CTTTGTATGGCTTCATTCAGCTTCCTGCATTCCTCGATGGTGGCATGATCATCATATGTGTCAT
CCATAAGGACAATGAATACAATTATCTTGGCAAGGATCATCCGTGTGAGTGTTAAGTTTTCTTC
ATAGAACAGCGCATAGGACCAAAGATATGACTCCACTGCACGATCTCTAACATGACTTAGCTCG
ACATATCCATAAAGATCTTTCCACCACCTGAAAATTAAAATGATCGATTGTTTTAGGTGCTTGT
TTTGAAGTATATTTAAGATATATATATTAGATCATTAGAAGCAATGAGTATTAATTGATTTATG
ATAGTAATAATATGTACATAGCATATCAGGCATACCGAAAACACTAACAACATGAAGAGCCATA
TTGCTAGTTATTTCAGTATATGTCACTAGTTATTGGATGTTTAAAGCCGCATAAAAGCCTCTAG
TGTATTGCTGCTGCAAATGCTGAGACAAAGATTGATAAAATATTCGGATATTCCTTGAAGGCTA
GCTGTCCTTCTTTTTTATCTGAGAGTGGACAAATTATATAGTAGTATAAACCTTAATTTTCTAT
TGTTCAATACTTGAAACTACAGATAAAGCGATACCTAAACTCGGATACACTAACTACCTCATTA
ACATGACATATATTGACTACTTCTGGACAAAACATAAAGTTGTACATGTATTTTGTGATTAATT
AACATTAAATTGGTTGCACAAACAAAGCGTCAATTTGTCTAAAACGAGGTACACATTTTATGTA
TTTACCATTCAGTACATCGAAGGAACACAACGTCTCTCCAGAATTTTGCACTTATCTATATCTG
TCTATCCTATATAGTCAGAGCTAAAATATCCACATGTATTGATTAAGTTCATCTGAAATACAAC
AGCCTTTGGATTCCTCCTTTACTTTGATCATAGCTACCCACATGTCATGTGTATTCAGAATTAA
CCACTTAGTATAATTGCTTTAGAGCTCAAGATGTATTGAGCAACATCTCACCTAGAAAGTAAAA
GCCATCGAATCCCTCTCATACTTGTCATAACTATTCATGAGTTGAAATTACACATCAACTTCTA
CGTAGCTCAAATTATAGTCCTTTTAGGTATGACGAGTAAATAATTTCCAATAGGTTTTTATCAA
GCTTTCCTAGAAAACAAATACTTCTAAATTCTCCACTGTAATGCACGGCCCATTCACTAATAAC
TAAATGTTCTCTAAATTATCTTTACTAACTGTAGAGCGAAGATCGAAAAACATATTTTGGTAGT
TGTATCGTGCACATACACAGATTTGAGATTATTACAGTGGTTTGTTTCTGTCCTAAAGGGCACA
ATCAATTACTTTCATGGTATATATTTACTTATTATATATATAAATATCAAATAAATACTCTTTT
TTTAGATAAAGGAAATGAATAAACCTGGTATCTACATCCACAAGACATGTACAAAGACAAAGCA
AAGAAAGACTCTTACTGAGAAAAAGCTTTGAGCTCCTTCAAGTGGACATGCTGCAGAAGGTTAA
ATTCCAGCTTTGCAAGATCTAAAAGAACAACAATACATTCTTCCTCCTGTCCGTACTCCAGCAT
GTAATGCAACATTTCAACTCTCTTGTAGGTTCTCGGTAATGGTAAGTGTAGGGCACGGTTGATT
TGATTATCTAGAGGGGCCTTGAGCCTACTTCCGTCCCTCATTGATTCGAGGTGGTGCCTTGCAA
AAGACATAGCTTCTTCAAGTTCTGGCTCATCATGGACAAGGAGGTGAGCTGCATTGTACAAACT
TAATAATGCCCTTGGTTCATCAGCTATTGTATTGATGAACCTCCCATCCTCTCCTTTGAATTTT
TCGAATACATCTGCAAGGCAGCTAAATTAAATGTGGATTTTTCCTTCCAAAAGACACTAGATTC
CCTTTTCATACAATTTTTTAATACATCGGATATTCTTGACTAATTTTTATGTATATATTCTAAT
CTGGACTTGTATTGAAAAGTTGTTTGACACAACCATAATTACGAAAATGAATGAATACCTACAA
TACAATGACTTAAAATTTGTGATCTAGAGAAAAATACAAAAATTTGTATATGTAAGTCATCACC
AATATAAGAAATACTGGCACTATTGAAAATTGGGCCTATCTGTCATATGCACATAGTGGATAAA
TTGTTACTCCCTCCTTTTCATATTATAAGTCGTTTGACTTTTTTGCTAGTCAAACTTCTTTAAG
ATTGACCAGATTTATAGAAACGAAGGGTGTATTTTGTAATAGACTTGTTTGGCATTGTTGTTGT
TTGTAAAATACATAGTAAATGTTGCAGTGAGATAGTTTTGACCAAGTTGCAATTTTGTGAAAAT
CACTCTGCAAGTTATCTCTTTCAGTATTTATTAGTACCTGGAGATACCCAAATGCCATGCTCCC
TAAGTAAGCGAAAGTGGAGAGCAACCTCGTGGAGACTAGAGCTAGTGAATTCACTTTCTTTGAT
GTCACTTATTGCATTGTTTATCTCATCTTGGAAAAGGTGATCTATTCCAAGACGTTGAACTGCA
TCTACTAAGTGCATTTTCTTGGCTGTATCATTGTGCGTCTCAAACAGTATACGGACGTCCTGTT
TTAGTTTATCAGCCTTTTCCATCATCCAATCCTCCGATCT
Conservation Information
Conserved circRNAs osi_circ_014249
PMCS 0.657848167
Functional Information
Coding potential Y
Potential coding position 16066996-16066993(-)
Potential amino acid sequence MMEKADKLKQDVRILFETHNDTAKKMHLVDAVQRLGIDHLFQDEINNAISDIKESEFTSSSLHE
VALHFRLLREHGIWVSPDVFEKFKGEDGRFINTIADEPRALLSLYNAAHLLVHDEPELEEAMSF
ARHHLESMRDGSRLKAPLDNQINRALHLPLPRTYKRVEMLHYMLEYGQEEECIVVLLDLAKLEF
NLLQHVHLKELKAFSQWWKDLYGYVELSHVRDRAVESYLWSYALFYEENLTLTRMILAKIIVFI
VLMDDTYDDHATIEECRKLNEAIQRDRRIG*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017