Detail information of Os04g0340300_circ_g.2


General Information
CircRNA Name Os04g0340300_circ_g.2
ID in PlantcircBase osa_circ_023452
Alias NA
Organism Oryza sativa
Position chr4: 16061603-16067009  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0340300
Parent gene annotation Terpenoid synthase domain containing protein. (Os04t0340300-01)
Parent gene strand -
Alternative splicing Os04g0340300_circ_igg.1 Os04g0340550_circ_g.1 Os04g0340300_circ_g.1 Os04g0340300_circ_igg.3 Os04g0340300_circ_g.4 Os04g0340300_circ_g.5 Os04g0340300_circ_igg.6 Os04g0340300_circ_igg.7 Os04g0340300_circ_ag.1 Os04g0340300_circ_igg.2 Os04g0340300_circ_igg.3 Os04g0340800_circ_g.1 Os04g0341500_circ_igg.1
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0340300-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTAAGTGCATTTTCTTGGCTGTATCATTGTGCGTCTCAAACAGTATACGGACGTCCTGTTTTAG
TTTATCAGCCTTTTCCATCATCCAATCCTCCGATCTctcttttttcatgcaggtcacccggtat
ttgtcactggcctctacttgagcttcagtctccctgaagtaattcagcagtgcacggtagaact
ttttcatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 993
Transcript exons: 16061603-16061738,16064346-16064564,16065833-16066211,16
066751-16067009
CTCTTTTTTCATGCAGGTCACCCGGTATTTGTCACTGGCCTCTACTTGAGCTTCAGTCTCCCTG
AAGTAATTCAGCAGTGCACGGTAGAACTTTTTCATGTACTCTGGTAGTAATGAGATAGCACTTT
CATCCCATCTTTGTATGGCTTCATTCAGCTTCCTGCATTCCTCGATGGTGGCATGATCATCATA
TGTGTCATCCATAAGGACAATGAATACAATTATCTTGGCAAGGATCATCCGTGTGAGTGTTAAG
TTTTCTTCATAGAACAGCGCATAGGACCAAAGATATGACTCCACTGCACGATCTCTAACATGAC
TTAGCTCGACATATCCATAAAGATCTTTCCACCACTGAGAAAAAGCTTTGAGCTCCTTCAAGTG
GACATGCTGCAGAAGGTTAAATTCCAGCTTTGCAAGATCTAAAAGAACAACAATACATTCTTCC
TCCTGTCCGTACTCCAGCATGTAATGCAACATTTCAACTCTCTTGTAGGTTCTCGGTAATGGTA
AGTGTAGGGCACGGTTGATTTGATTATCTAGAGGGGCCTTGAGCCTACTTCCGTCCCTCATTGA
TTCGAGGTGGTGCCTTGCAAAAGACATAGCTTCTTCAAGTTCTGGCTCATCATGGACAAGGAGG
TGAGCTGCATTGTACAAACTTAATAATGCCCTTGGTTCATCAGCTATTGTATTGATGAACCTCC
CATCCTCTCCTTTGAATTTTTCGAATACATCTGGAGATACCCAAATGCCATGCTCCCTAAGTAA
GCGAAAGTGGAGAGCAACCTCGTGGAGACTAGAGCTAGTGAATTCACTTTCTTTGATGTCACTT
ATTGCATTGTTTATCTCATCTTGGAAAAGGTGATCTATTCCAAGACGTTGAACTGCATCTACTA
AGTGCATTTTCTTGGCTGTATCATTGTGCGTCTCAAACAGTATACGGACGTCCTGTTTTAGTTT
ATCAGCCTTTTCCATCATCCAATCCTCCGATCT

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.416452714
Functional Information
Coding potential Y
Potential coding position 16066996-16061605(-)
Potential amino acid sequence MMEKADKLKQDVRILFETHNDTAKKMHLVDAVQRLGIDHLFQDEINNAISDIKESEFTSSSLHE
VALHFRLLREHGIWVSPDVFEKFKGEDGRFINTIADEPRALLSLYNAAHLLVHDEPELEEAMSF
ARHHLESMRDGSRLKAPLDNQINRALHLPLPRTYKRVEMLHYMLEYGQEEECIVVLLDLAKLEF
NLLQHVHLKELKAFSQWWKDLYGYVELSHVRDRAVESYLWSYALFYEENLTLTRMILAKIIVFI
VLMDDTYDDHATIEECRKLNEAIQRWDESAISLLPEYMKKFYRALLNYFRETEAQVEASDKYRV
TCMKKERSEDWMMEKADKLKQDVRILFETHNDTAKKMHLVDAVQRLGIDHLFQDEINNAISDIK
ESEFTSSSLHEVALHFRLLREHGIWVSPDVFEKFKGEDGRFINTIADEPRALLSLYNAAHLLVH
DEPELEEAMSFARHHLESMRDGSRLKAPLDNQINRALHLPLPRTYKRVEMLHYMLEYGQEEECI
VVLLDLAKLEFNLLQHVHLKELKAFSQWWKDLYGYVELSHVRDRAVESYLWSYALFYEENLTLT
RMILAKIIVFIVLMDDTYDDHATIEECRKLNEAIQRWDESAISLLPEYMKKFYRALLNYFRETE
AQVEASDKYRVTCMKKERSEDWMMEKADKLKQDVRILFETHNDTAKKMHLVDAVQRLGIDHLFQ
DEINNAISDIKESEFTSSSLHEVALHFRLLREHGIWVSPDVFEKFKGEDGRFINTIADEPRALL
SLYNAAHLLVHDEPELEEAMSFARHHLESMRDGSRLKAPLDNQINRALHLPLPRTYKRVEMLHY
MLEYGQEEECIVVLLDLAKLEFNLLQHVHLKELKAFSQWWKDLYGYVELSHVRDRAVESYLWSY
ALFYEENLTLTRMILAKIIVFIVLMDDTYDDHATIEECRKLNEAIQRWDESAISLLPEYMKKFY
RALLNYFRETEAQVEASDKYRVTCMKKERSEDWMMEKADKLKQDVRILFETHNDTAKKMHLVDA
VQRLGIDHLFQDEINNAISDIKESEFTSSSLHEVALHFRLLREHGIWVSPDVFEKFKGEDGRFI
NTIADEPRALLSLYNAAHLLVHDEPELEEAMSFARHHLESMRDGSRLKAPLDNQINRALHLPLP
RTYKRVEMLHYMLEYGQEEECIVVLLDLAKLEFNLLQHVHLKELKAFSQWWKDLYGYVELSHVR
DRAVESYLWSYALFYEENLTLTRMILAKIIVFIVLMDDTYDDHATIEECRKLNEAIQRWDESAI
SLLPEYMKKFYRALLNYFRETEAQVEASDKYRVTCMKKE(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017