Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0340300_circ_g.2 |
ID in PlantcircBase | osa_circ_023452 |
Alias | NA |
Organism | Oryza sativa |
Position | chr4: 16061603-16067009 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os04g0340300 |
Parent gene annotation |
Terpenoid synthase domain containing protein. (Os04t0340300-01) |
Parent gene strand | - |
Alternative splicing | Os04g0340300_circ_igg.1 Os04g0340550_circ_g.1 Os04g0340300_circ_g.1 Os04g0340300_circ_igg.3 Os04g0340300_circ_g.4 Os04g0340300_circ_g.5 Os04g0340300_circ_igg.6 Os04g0340300_circ_igg.7 Os04g0340300_circ_ag.1 Os04g0340300_circ_igg.2 Os04g0340300_circ_igg.3 Os04g0340800_circ_g.1 Os04g0341500_circ_igg.1 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os04t0340300-01:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.416452714 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
16066996-16061605(-) |
Potential amino acid sequence |
MMEKADKLKQDVRILFETHNDTAKKMHLVDAVQRLGIDHLFQDEINNAISDIKESEFTSSSLHE VALHFRLLREHGIWVSPDVFEKFKGEDGRFINTIADEPRALLSLYNAAHLLVHDEPELEEAMSF ARHHLESMRDGSRLKAPLDNQINRALHLPLPRTYKRVEMLHYMLEYGQEEECIVVLLDLAKLEF NLLQHVHLKELKAFSQWWKDLYGYVELSHVRDRAVESYLWSYALFYEENLTLTRMILAKIIVFI VLMDDTYDDHATIEECRKLNEAIQRWDESAISLLPEYMKKFYRALLNYFRETEAQVEASDKYRV TCMKKERSEDWMMEKADKLKQDVRILFETHNDTAKKMHLVDAVQRLGIDHLFQDEINNAISDIK ESEFTSSSLHEVALHFRLLREHGIWVSPDVFEKFKGEDGRFINTIADEPRALLSLYNAAHLLVH DEPELEEAMSFARHHLESMRDGSRLKAPLDNQINRALHLPLPRTYKRVEMLHYMLEYGQEEECI VVLLDLAKLEFNLLQHVHLKELKAFSQWWKDLYGYVELSHVRDRAVESYLWSYALFYEENLTLT RMILAKIIVFIVLMDDTYDDHATIEECRKLNEAIQRWDESAISLLPEYMKKFYRALLNYFRETE AQVEASDKYRVTCMKKERSEDWMMEKADKLKQDVRILFETHNDTAKKMHLVDAVQRLGIDHLFQ DEINNAISDIKESEFTSSSLHEVALHFRLLREHGIWVSPDVFEKFKGEDGRFINTIADEPRALL SLYNAAHLLVHDEPELEEAMSFARHHLESMRDGSRLKAPLDNQINRALHLPLPRTYKRVEMLHY MLEYGQEEECIVVLLDLAKLEFNLLQHVHLKELKAFSQWWKDLYGYVELSHVRDRAVESYLWSY ALFYEENLTLTRMILAKIIVFIVLMDDTYDDHATIEECRKLNEAIQRWDESAISLLPEYMKKFY RALLNYFRETEAQVEASDKYRVTCMKKERSEDWMMEKADKLKQDVRILFETHNDTAKKMHLVDA VQRLGIDHLFQDEINNAISDIKESEFTSSSLHEVALHFRLLREHGIWVSPDVFEKFKGEDGRFI NTIADEPRALLSLYNAAHLLVHDEPELEEAMSFARHHLESMRDGSRLKAPLDNQINRALHLPLP RTYKRVEMLHYMLEYGQEEECIVVLLDLAKLEFNLLQHVHLKELKAFSQWWKDLYGYVELSHVR DRAVESYLWSYALFYEENLTLTRMILAKIIVFIVLMDDTYDDHATIEECRKLNEAIQRWDESAI SLLPEYMKKFYRALLNYFRETEAQVEASDKYRVTCMKKE(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |