Detail information of Os04g0340800_circ_g.1


General Information
CircRNA Name Os04g0340800_circ_g.1
ID in PlantcircBase osa_circ_023461
Alias NA
Organism Oryza sativa
Position chr4: 16101204-16101313  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os04g0340800
Parent gene annotation Conserved hypothetical protein. (Os04t0340800-01);Conserved hypo
thetical protein. (Os04t0340800-02)
Parent gene strand +
Alternative splicing Os04g0340300_circ_igg.1 Os04g0340550_circ_g.1 Os04g0340300_circ_g.1 Os04g0340300_circ_g.2 Os04g0340300_circ_igg.3 Os04g0340300_circ_g.4 Os04g0340300_circ_g.5 Os04g0340300_circ_igg.6 Os04g0340300_circ_igg.7 Os04g0340300_circ_ag.1 Os04g0340300_circ_igg.2 Os04g0340300_circ_igg.3 Os04g0341500_circ_igg.1
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   TT-AG
Number of exons covered Os04t0340800-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATATTGTTTGCAACTGTCAACGTTTATTGTAGCTGTTCATTACAATCTTATGTCgtcattctc
ttcctatttgttatgtcgaactcactacatagcattatatgatctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCATTCTCTTCCTATTTGTTATGTCGAACTCACTACATAGCATTATATGATCTCAATATTGTT
TGCAACTGTCAACGTTTATTGTAGCTGTTCATTACAATCTTATGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.359350649
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017