Detail information of Os04g0340300_circ_g.1


General Information
CircRNA Name Os04g0340300_circ_g.1
ID in PlantcircBase osa_circ_023451
Alias NA
Organism Oryza sativa
Position chr4: 16061603-16066211  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0340300
Parent gene annotation Terpenoid synthase domain containing protein. (Os04t0340300-01)
Parent gene strand -
Alternative splicing Os04g0340300_circ_igg.1 Os04g0340550_circ_g.1 Os04g0340300_circ_g.2 Os04g0340300_circ_igg.3 Os04g0340300_circ_g.4 Os04g0340300_circ_g.5 Os04g0340300_circ_igg.6 Os04g0340300_circ_igg.7 Os04g0340300_circ_ag.1 Os04g0340300_circ_igg.2 Os04g0340300_circ_igg.3 Os04g0340800_circ_g.1 Os04g0341500_circ_igg.1
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0340300-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGAGGTGAGCTGCATTGTACAAACTTAATAATGCCCTTGGTTCATCAGCTATTGTATTGATGA
ACCTCCCATCCTCTCCTTTGAATTTTTCGAATACATctcttttttcatgcaggtcacccggtat
ttgtcactggcctctacttgagcttcagtctccctgaagtaattcagcagtgcacggtagaact
ttttcatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 734
Transcript exons: 16061603-16061738,16064346-16064564,16065833-16066211
CTCTTTTTTCATGCAGGTCACCCGGTATTTGTCACTGGCCTCTACTTGAGCTTCAGTCTCCCTG
AAGTAATTCAGCAGTGCACGGTAGAACTTTTTCATGTACTCTGGTAGTAATGAGATAGCACTTT
CATCCCATCTTTGTATGGCTTCATTCAGCTTCCTGCATTCCTCGATGGTGGCATGATCATCATA
TGTGTCATCCATAAGGACAATGAATACAATTATCTTGGCAAGGATCATCCGTGTGAGTGTTAAG
TTTTCTTCATAGAACAGCGCATAGGACCAAAGATATGACTCCACTGCACGATCTCTAACATGAC
TTAGCTCGACATATCCATAAAGATCTTTCCACCACTGAGAAAAAGCTTTGAGCTCCTTCAAGTG
GACATGCTGCAGAAGGTTAAATTCCAGCTTTGCAAGATCTAAAAGAACAACAATACATTCTTCC
TCCTGTCCGTACTCCAGCATGTAATGCAACATTTCAACTCTCTTGTAGGTTCTCGGTAATGGTA
AGTGTAGGGCACGGTTGATTTGATTATCTAGAGGGGCCTTGAGCCTACTTCCGTCCCTCATTGA
TTCGAGGTGGTGCCTTGCAAAAGACATAGCTTCTTCAAGTTCTGGCTCATCATGGACAAGGAGG
TGAGCTGCATTGTACAAACTTAATAATGCCCTTGGTTCATCAGCTATTGTATTGATGAACCTCC
CATCCTCTCCTTTGAATTTTTCGAATACAT

Genomic sequence CTCTTTTTTCATGCAGGTCACCCGGTATTTGTCACTGGCCTCTACTTGAGCTTCAGTCTCCCTG
AAGTAATTCAGCAGTGCACGGTAGAACTTTTTCATGTACTCTGGTAGTAATGAGATAGCACTTT
CATCCCATCTGTCCAATAGGCCAATTGGGAATTTTTATGAAATTACTTAATTAGGCAAGTGTAA
ATAAATCTAGCCGAAAAAGATAGTTTGACAGGGATGTATCGCGTTGAAACCACAAATAAATGAA
TGAAATACTTTGTAAATTATGCTCAAATGGACACGCCATGTACCAGTGACGAATAAAGTGGTTT
GATGATGTTTAATATTTCTCGAATGAAAGACTTGTTAACATTGTGTGAAACGCGTGACCATAAT
TAATTGAGATGTATAGTGATCGATAAATTCGATGGTAACTGTACAACAAATTTATTTAGTTAGA
GGATCAACATGGTTTTTCAGTTGTGCTTTACTCAGATTAATTGTTTAGGTGCATTAAACATCAA
AAGGTAAAATAAACAATTTCTTTTTTATTTGCTCTAAGTAGCTCGGGTTCATGGAAATTGTTGG
TTCATATCATGCTGGCAGCAACAGCTCGGTAACAAGAATACTGATGCCAGCTACCTTTGGTAGT
TGTAGCTAGCTCTACCTCCAGTTGCACATCTCTGTTTTAATTAACTAAAAGTTGGCCTTAGCTG
TTTCTTGATAGAATGACAGTAGAATATATGTGTATGCATGAGCGGTACTCTGCTTGGTCATTGC
ATAGTAGTTGGAAAAACTCGCATGTTTTGCTGCTCTAGAATTAGAGGTGGAATGTTGAATGCTC
GGAAAACTACTTTTATAGGCGGTTACAATATAATTGGTACCCCCATTTTTGGAAGTGTTTAGCC
AACCAAATGTTACATAGGGCCTATAGAAATCGACAGTTTTGTGCTAGTGGATTGCACAACTGCA
TGTTAACAAATCTATTTTTTTGTATTTTAAGTTCGACTTTCAAGTCTTTAATTATTGTAGGCGC
AAAAAGTATTTCATATTTTAATTATCACAAGTTCGCAATTTTTTCACACAAAATATGCATCTAG
TATGTAGGATTCAAATCCGGGATCTCTCCCTTCATGTGTATCTTACTTATTACCATCTTACATA
TGAAGCACTTTGTTAATTACTATGAAATAGACGTTGGTCTTCTAATTTAAACTCTCCTAAACTT
GTAACACATATTAAAACCTTAAAGATTTATGTAGTGTTCATTTGAAGTGCGATTGAGGTGAACT
AAAGTTATATATGATCCCAACAATTTTTTCATTAAATTTGTAAGGTCCATATTTTGGTAATATC
CTTGTTCACTTATGTCAAGTTCCCATTGTATGTTTTGATGTGTTATGCAACTTGACATTTGTGA
ATGTTCATAATAAAGGAAATATCAAAAAAAAAATTGACTAGGCCATATTTGAGGAAATATTGTA
AGGATCTCATAGAACTTTGGATTAACTCAATTGGACTTAAGGTGTATTTTCTATGAATTTTAAA
ACTTTAGACTTCATAAAGATCTGTTTGTAAAATCATCCTATTTTAAAAAGTAGATTCCGAATTT
GTAACGAATATTTCGGCACCTAAATGTTCTTAAATGAAATAACTTTGACTAGAAAGTTACAAAC
CTTGTCGAGCGCTATATTGTTTTATAGAAATTGTACCCGTCAACGTATGTAACAAAAAATTCTA
ATGTAGACCTTAAAGCTTCTTATAATGAACTTTTGATCCCATTAACTACCTAAAATAGAAAAAC
ATTAACTACAACATCTCAACAAGAACTATAATTGTCACATAACATTTGTCATTAGGCGACATCA
TAGGAAAGAGTTACAAGTGGTTTCCTAATAGAACTGCCCTTAAAAATCAATTTTATTGATTTTT
TCTTATGAGATCCGTATATAAAAATGACCCCACCTTTCAAATTACGCGACCCATTTGTGTTAAT
AGACCTATTTTCACATGCAATTTTTCATAAGGAGCTATCTGTAAAAATAGTTTTCTTTTGTTAT
ATGACCCTGGGCGGCATTAGTCATCTTCATAGGGACACGGAAATGGTTTGTAGTGGTTACGATG
AAAAATGTGCATGTGCCTATTATTGAAATAAAAAGACTGCCAGCTTTTGGCCATCTAGACAATG
CGTCAGAGACAACCATCCCAATCTATCCCCTCCCCATCCCATCTAGAAGTAAAAGTATAGGTAG
GGTCTTCCAAAAATACACAAAATATTGAATCTGCATGGGAGGGGCAGAGGGTAGCTAATGAAGG
GGTGGGAGAGGTGCAGAGGATCGATGGGCACGCGTGTGACACATTGCTTAGTTAAACAACATGC
TACGTGTTAGGCAATAGCACGTTCTCTCTCTCTCTCTCTTTCTATCTATCTCTGTATATTTTTC
CATAGAAATTACTTTAAGTATATGAGGTTATATCACACGGTCATGCATAGCGTTTAGAAGTTTC
AATTGATTCAGATTTACAGGTATAGGGGTAGAATAGTTAAATTTTGATTTATTTTTGGGCTTCT
GATTTGATCATCTGTACCTTTCAATTTTGAAAAGCCTGATCTTTAACATATTATAATATTCTGT
GAAACTTTAGAACTTTTAAATATAATTTGTTGTGCGGTTTTCTTGATTTCTCTTACAATTGGTG
GCTCGAGATGAAGGATATTAATTTCTGTTGTTTTTGACCTATTAATTAATCGTACCTTTGTATG
GCTTCATTCAGCTTCCTGCATTCCTCGATGGTGGCATGATCATCATATGTGTCATCCATAAGGA
CAATGAATACAATTATCTTGGCAAGGATCATCCGTGTGAGTGTTAAGTTTTCTTCATAGAACAG
CGCATAGGACCAAAGATATGACTCCACTGCACGATCTCTAACATGACTTAGCTCGACATATCCA
TAAAGATCTTTCCACCACCTGAAAATTAAAATGATCGATTGTTTTAGGTGCTTGTTTTGAAGTA
TATTTAAGATATATATATTAGATCATTAGAAGCAATGAGTATTAATTGATTTATGATAGTAATA
ATATGTACATAGCATATCAGGCATACCGAAAACACTAACAACATGAAGAGCCATATTGCTAGTT
ATTTCAGTATATGTCACTAGTTATTGGATGTTTAAAGCCGCATAAAAGCCTCTAGTGTATTGCT
GCTGCAAATGCTGAGACAAAGATTGATAAAATATTCGGATATTCCTTGAAGGCTAGCTGTCCTT
CTTTTTTATCTGAGAGTGGACAAATTATATAGTAGTATAAACCTTAATTTTCTATTGTTCAATA
CTTGAAACTACAGATAAAGCGATACCTAAACTCGGATACACTAACTACCTCATTAACATGACAT
ATATTGACTACTTCTGGACAAAACATAAAGTTGTACATGTATTTTGTGATTAATTAACATTAAA
TTGGTTGCACAAACAAAGCGTCAATTTGTCTAAAACGAGGTACACATTTTATGTATTTACCATT
CAGTACATCGAAGGAACACAACGTCTCTCCAGAATTTTGCACTTATCTATATCTGTCTATCCTA
TATAGTCAGAGCTAAAATATCCACATGTATTGATTAAGTTCATCTGAAATACAACAGCCTTTGG
ATTCCTCCTTTACTTTGATCATAGCTACCCACATGTCATGTGTATTCAGAATTAACCACTTAGT
ATAATTGCTTTAGAGCTCAAGATGTATTGAGCAACATCTCACCTAGAAAGTAAAAGCCATCGAA
TCCCTCTCATACTTGTCATAACTATTCATGAGTTGAAATTACACATCAACTTCTACGTAGCTCA
AATTATAGTCCTTTTAGGTATGACGAGTAAATAATTTCCAATAGGTTTTTATCAAGCTTTCCTA
GAAAACAAATACTTCTAAATTCTCCACTGTAATGCACGGCCCATTCACTAATAACTAAATGTTC
TCTAAATTATCTTTACTAACTGTAGAGCGAAGATCGAAAAACATATTTTGGTAGTTGTATCGTG
CACATACACAGATTTGAGATTATTACAGTGGTTTGTTTCTGTCCTAAAGGGCACAATCAATTAC
TTTCATGGTATATATTTACTTATTATATATATAAATATCAAATAAATACTCTTTTTTTAGATAA
AGGAAATGAATAAACCTGGTATCTACATCCACAAGACATGTACAAAGACAAAGCAAAGAAAGAC
TCTTACTGAGAAAAAGCTTTGAGCTCCTTCAAGTGGACATGCTGCAGAAGGTTAAATTCCAGCT
TTGCAAGATCTAAAAGAACAACAATACATTCTTCCTCCTGTCCGTACTCCAGCATGTAATGCAA
CATTTCAACTCTCTTGTAGGTTCTCGGTAATGGTAAGTGTAGGGCACGGTTGATTTGATTATCT
AGAGGGGCCTTGAGCCTACTTCCGTCCCTCATTGATTCGAGGTGGTGCCTTGCAAAAGACATAG
CTTCTTCAAGTTCTGGCTCATCATGGACAAGGAGGTGAGCTGCATTGTACAAACTTAATAATGC
CCTTGGTTCATCAGCTATTGTATTGATGAACCTCCCATCCTCTCCTTTGAATTTTTCGAATACA
T
Conservation Information
Conserved circRNAs osi_circ_014248
PMCS 0.311999816
Functional Information
Coding potential Y
Potential coding position 16066173-16061664(+)
16066082-16066163(-)
Potential amino acid sequence MNLPSSPLNFSNTSLFSCRSPGICHWPLLELQSP*(+)
MSFARHHLESMRDGSRLKAPLDNQINRALHLPLPRTYKRVEMLHYMLEYGQEEECIVVLLDLAK
LEFNLLQHVHLKELKAFSQWWKDLYGYVELSHVRDRAVESYLWSYALFYEENLTLTRMILAKII
VFIVLMDDTYDDHATIEECRKLNEAIQRWDESAISLLPEYMKKFYRALLNYFRETEAQVEASDK
YRVTCMKKEMYSKNSKERMGGSSIQ*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017