Detail information of Os04g0340300_circ_g.5


General Information
CircRNA Name Os04g0340300_circ_g.5
ID in PlantcircBase osa_circ_023455
Alias NA
Organism Oryza sativa
Position chr4: 16066231-16066750  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os04g0340300
Parent gene annotation Terpenoid synthase domain containing protein. (Os04t0340300-01)
Parent gene strand -
Alternative splicing Os04g0340300_circ_igg.1 Os04g0340550_circ_g.1 Os04g0340300_circ_g.1 Os04g0340300_circ_g.2 Os04g0340300_circ_igg.3 Os04g0340300_circ_g.4 Os04g0340300_circ_igg.6 Os04g0340300_circ_igg.7 Os04g0340300_circ_ag.1 Os04g0340300_circ_igg.2 Os04g0340300_circ_igg.3 Os04g0340800_circ_g.1 Os04g0341500_circ_igg.1
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTAAAATACATAGTAAATGTTGCAGTGAGATAGTTTTGACCAAGTTGCAATTTTGTGAAAATC
ACTCTGCAAGTTATCTCTTTCAGTATTTATTAGTACaatgtggatttttccttccaaaagacac
tagattcccttttcatacaattttttaatacatcggatattcttgactaatttttatgtatata
ttctaatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AATGTGGATTTTTCCTTCCAAAAGACACTAGATTCCCTTTTCATACAATTTTTTAATACATCGG
ATATTCTTGACTAATTTTTATGTATATATTCTAATCTGGACTTGTATTGAAAAGTTGTTTGACA
CAACCATAATTACGAAAATGAATGAATACCTACAATACAATGACTTAAAATTTGTGATCTAGAG
AAAAATACAAAAATTTGTATATGTAAGTCATCACCAATATAAGAAATACTGGCACTATTGAAAA
TTGGGCCTATCTGTCATATGCACATAGTGGATAAATTGTTACTCCCTCCTTTTCATATTATAAG
TCGTTTGACTTTTTTGCTAGTCAAACTTCTTTAAGATTGACCAGATTTATAGAAACGAAGGGTG
TATTTTGTAATAGACTTGTTTGGCATTGTTGTTGTTTGTAAAATACATAGTAAATGTTGCAGTG
AGATAGTTTTGACCAAGTTGCAATTTTGTGAAAATCACTCTGCAAGTTATCTCTTTCAGTATTT
ATTAGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.233522804
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017