Detail information of Os04g0340550_circ_g.1


General Information
CircRNA Name Os04g0340550_circ_g.1
ID in PlantcircBase osa_circ_023450
Alias NA
Organism Oryza sativa
Position chr4: 16061434-16061602  JBrowse»
Reference genome IRGSP-1.0.38
Type   ie-circRNA
Identification method CIRCexplorer
Parent gene Os04g0340300
Parent gene annotation Terpenoid synthase domain containing protein. (Os04t0340300-01)
Parent gene strand -
Alternative splicing Os04g0340300_circ_igg.1 Os04g0340300_circ_g.1 Os04g0340300_circ_g.2 Os04g0340300_circ_igg.3 Os04g0340300_circ_g.4 Os04g0340300_circ_g.5 Os04g0340300_circ_igg.6 Os04g0340300_circ_igg.7 Os04g0340300_circ_ag.1 Os04g0340300_circ_igg.2 Os04g0340300_circ_igg.3 Os04g0340800_circ_g.1 Os04g0341500_circ_igg.1
Support reads 2
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AT
Number of exons covered Os04t0340550-01:1
Os04t0340550-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAACGATCAATGCATAATATGAAGATTTAAACAAATACAGGAAATAAAAGTGGAAAGATGCAG
TACATATATAACTGGTATACagtttattccaatagatgacaaatttcattggtgcacacgatct
tttcttggtatatatcgataacatacagtaagaagaatcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGTTTATTCCAATAGATGACAAATTTCATTGGTGCACACGATCTTTTCTTGGTATATATCGATA
ACATACAGTAAGAAGAATCCATTAACGATCAATGCATAATATGAAGATTTAAACAAATACAGGA
AATAAAAGTGGAAAGATGCAGTACATATATAACTGGTATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.434329565
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017