Detail information of Os04g0341500_circ_igg.1


General Information
CircRNA Name Os04g0341500_circ_igg.1
ID in PlantcircBase osa_circ_023462
Alias NA
Organism Oryza sativa
Position chr4: 16155023-16159629  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os04g0340300_circ_igg.1 Os04g0340550_circ_g.1 Os04g0340300_circ_g.1 Os04g0340300_circ_g.2 Os04g0340300_circ_igg.3 Os04g0340300_circ_g.4 Os04g0340300_circ_g.5 Os04g0340300_circ_igg.6 Os04g0340300_circ_igg.7 Os04g0340300_circ_ag.1 Os04g0340300_circ_igg.2 Os04g0340300_circ_igg.3 Os04g0340800_circ_g.1
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGAGGTGAGCTGCATTGTACAAACTTAATAATGCCCTTGGTTCATCAGCTATTGTATTGATGA
ACCTCCCATCCTCTCCTTTGAATTTTTCGAATACATctcttttttcatgcaggtcacccggtat
ttgtcactggcctctacttgagcttcagtctccctgaagtaattctgcagtgcacggtagaact
ttttcatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTTTTTTCATGCAGGTCACCCGGTATTTGTCACTGGCCTCTACTTGAGCTTCAGTCTCCCTG
AAGTAATTCTGCAGTGCACGGTAGAACTTTTTCATGTACTCTGGTAGTAATGAGATAGCACTTT
CATCCCATCTGTCCAATAGGCCAATTGGGAATTTTTATGAAATTACTTAATTAGGCAAGTGTAA
ATAAATCTAGCCGAAAAAGATAGTTTGACAGGGATGTATCGCGTTGAAACCACAAATAAATGAA
TGAAATACTTTGTAAATTATGCTCAAATGGACACGCCATGTACCAGTGACGAATAAAGTGGTTT
GATGATGTTTAATATTTCTCGAATGAAAGACTTGTTAACATTGTGTGAAACGCGTGACCATAAT
TAATTGAGATGTATAGTGATCGATAAATTCGATGGTAACTGTACAACAAATTTATTTAGTTAGA
GGATCAACATGGTTTTTCAGTTGTGCTTTACTCAGATTAATTGTTTAGGTGCATTAAACATCAA
AAGGTAAAATAAACAATTTCTTTTTTATTTGCTCTAAGTAGCTCGGGTTCATGGAAATTGTTGG
TTCATATCATGCTGGCAGCAACAGCTCGGTAACAAGAATACTGATGCCAGCTACCTTTGGTAGT
TGTAGCTAGCTCTACCTCCAGTTGCACATCTCTGTTTTAATTAACTAAAAGTTGGCCTTAGCTG
TTTCTTGATAGAATGACAGTAGAATATATGTGTATGCATGAGCGGTACTCTGCTTGGTCATTGC
ATAGTAGTTGGAAAAACTCGCATGTTTTGCTGCTCTAGAATTAGAGGTGGAATGTTGAATGCTC
GGAAAACTACTTTTATAGGCAGTTACAATATAATTGGTACCCCCATTTTTGGAAGTGTTTAGCC
AACCAAATGTTACATAGGGCCTATAGAAATCGACAGTTTTGTGCTAGTGGATTGCACAACTGCA
TGTTAACAAATCTATTTTTTTGTATTTTAAGTTCGACTTTCAAGTCTTTAATTATTGTAGGCGC
AAAAAGTATTTCATATTTTAATTGTCACAAGTTCGCAATTTTTTCACACAAAATATGCATCTAG
TATGTAGGATTCAAATCCGGGATCTCTCCCTTCACGTGTATCTTACTTATTACCATCTTACATA
TGAAGCACTTTGTTAATTACTATGAAATAGACGTTGATCTTCTAATTTAAACTCTCTTAAACTT
GTAACACATATTAAAACCTTAAAGATTTATGTAGTGTTCATTTGAAGTGCGATTGAGGTGAACT
AAAGTTATATATGATCCCAACAATTTTTTCATTAAATTTGTAAGGTCCATATTTTGGTAATATC
ATTGTTCACTTATGTCAAGTTCCCACTGTATGTTTTGATGTGTTATGCAACTTGACATTTGTGA
ATGTTCATAATAAAGGAAATATAAAAAAAAATTGACTAGGCCATATTTGAGGAAATATTGTAAG
GATCTCATAGAACTTTGGATTAACTCAATTGGACTTAAGGTGTATTTTCTATGAATTTTAAAAC
TTTAGACTTCATAAAGATCTGTTTGTAAAATCATCCTTTTTTAAAAAGTAGATTCCGAATTTGA
AACGAATATTTCGGCACCTAAGTGTTCTTAAATGAAATAACTTTGACTAGAAAGTTACAAACCT
TGTCGAGCGCTATATTGTTTTATAGAAATTGTACCCGTCAACGTATGTAACAAAAAATTCTAAT
GTAGACCTTAAAGCTTCTTATAATGAACTTTTGATCCCATTAACTACCTAAAATAGAAAAACAT
TAACTACAACATCTCAACAAGAACTACAATTGTCACATAACATTTGTCATTAGGCGACATCATA
GGAAAGAGTTACAAGTGGTTTCCTAATAGAACTGCCCTTAAAAATCAATTTTATTGATTTTTTC
TTATAAGATCCGTATATAAAAATGACCCCACCTTTCAAATTACGCGACCCATTTGTGTTAATAG
ACCTATTTTCACATGCAATTTTTCATAAGGAGCTATCTGTAGAAATAGTTTTCTTTTGTTATAT
GACCCTGGGCGGCATTAGTCATCTTCATAGGGACACGGAAATGGTTTGTAGTGGTTACGATGAA
AAATGTGCATGTGCCTATTATTGAAATAAAAAGACTGCCAGCTTTTGGCCATCTAGACAATGCG
TCAGAGACAACCATCCCAATCTATCCCCTCCCCATCCCATCTAGAAGTAAAAGTATAGGTAGGG
TCTTCCAAAAATACACAAAATATTGAATCTGCATGGGAGGGGCAGAGGGTAGCTAATGAAGGGG
TGGGAGAGGTGCAGAGGATCGATGGGCACGCGTGTGACACATTGCTTAGTTAAACAACATGCTA
CGTGTTACGCAATAGCACGTTCTCTCTCTCTCCCTCTTTCTATCTATCTCTGTATATTTTTCCA
TAGAAATTACTTTAAGTATATGAGGTTATATCACACGGTCATGCATAGCGGTTAGAGGTTTTAA
TTGATTCAGATTTACAGGTATAGGGGTAGAATAGTTAAATTTTGATTTATTTTTGGGCTTCTGA
TTTGATCATCTGTACCTTTCAATTTTGAAAAGCCTGATCTTTAACATATTATAATATTCTGTGA
AACTTTAGAACTTTTAAATATAATTTGTTGTGCGGTTTTCTTGATTTCTCTTACAATTGGTGGC
TTGAGATGAAGGATATTAATTTCTGTTGTTTTTGACCTATTAATTAATCGTACCTTTGTATGGC
TTCATTCAGCTTCCTGCATTCCTCGATGGTGGCATGATCATCATATGTGTCATCCATAAGGACA
ATGAATACAATTATCTTGGCAAGGATCATCCGTGTGAGTGTTAAGTTTTCTTCATAGAATAGCG
CATAGGACCAAAGATATGACTCCACTGCACGATCTCTAACATGACTTAGCTCGACATATCCATA
AAGATCTTTCCACCACCTGAAAATTAAAATGATCGATTGTTTTAGGTGCTTGTTTTGAAGTATA
TTTAAGATATATATATTAGATCATTAGAAGCAATGAGTATTAATTGATTTATGATAGTAATAAT
ATGTACATAGCATATCAGGCATACCGAAAACACTAACAACATGAAGAGCCATATTGCTAGTTAT
TTCAGTATATGTCACTAGTTATTGGATGTTTAAAGCCGCATAAAAGCCTCTAGTGTATTGCTGC
TGCAAATGCTGAGACAAAGATTGATAAAATATTCGGATATTCCTTGAAGGCTAGCTGTCCTTCT
TTTTTATCTGAGAGTGGACAAATTATATAGTAGTATAAACCTTAATTTTCTATTGTTCAATACT
TGAAACTACAGATAAAGCGATACCTAAACTCGGATACACTAACTACCTCATTAACATGACATAT
ATTGACTACTTCTGGACAAAACATAAAGTTGTACATGTATTTTGTGATTAATTAACATTAAATT
GGTTGCACAAACAAAGCGTCAATTTGTCTAAAACGAGGTACACATTTTATGTATTTACCATTCA
GTACATCGAAGGAACACAACGTCTCTCCAGAATTTTGCACTTATCTATATCTGTCTATCCTATA
TAGTCAGAGCTAAAATATCCACATGTATTGATTAAGTTCATCTGAAATACAACAGCCTTTGGAT
TCCTCCTTTACTTTGATCATAGCTACCCACATGTCATGTGTATTCAGAATTAACCACTTAGTAT
AATTGCTTTAGAGCTCAAGATGTATTGAGCAACATCTCACCTAGAAAGTAAAAGCCATCGAATC
CCTCTCATACTTGTCATAACTATTCATGAGTTGAAATTACACATCAACTTCTACGTAGCTCAAA
TTATAGTCCTTTTAGGTATGACGAGTAAATAATTTCCAATAGGTTTTTATCAAGCTTTCCTAGA
AAACAAATACTTCTAAATTCTCCACTGTAACGCACGGCCCATTCACTAATAACTAAATATTCTC
TAAATTATCTTTACTAACTGTAGAGCGAAGATCGAAAAACATATTTTGGTAGTTGTATCGTGCA
CATACACAGATTTGAGATTATTACAGTGGTTTGTTTCTGTCCTAAAGGGCACAATCAATTACTT
TCATGGTATATATTTACTTATTATATATATAAATATCAAATAAATACTCTTTTTTTAGATAAAG
GAAATGAATAAACCTGGTATCTACATCCACAAGACATGTACAAAGACAAAGCAAAGAAAGACTC
TTACTGAGAAAAAGCTTTGAGCTCCTTCAAGTGGACATGCTGCAGAAGGTTAAATTCCAGCTTT
GCAAGATCTAAAAGAACAACAATACACTCTTCCTCCTGTCCGTACTCCAGCATGTAATGCAACA
TTTCAACTCTCTTGTAGGTTCTCGGTAATGGTAAGTGTAGGGCACGGTTGATTTGATTATCTAG
AGGGGCCTTGAGCCTACTTCCATCCCTCATTGATTCGAGGTGGTGCCTTGCAAAAGACATAGCT
TCTTCAAGTTCTGGCTCATCATGGACAAGGAGGTGAGCTGCATTGTACAAACTTAATAATGCCC
TTGGTTCATCAGCTATTGTATTGATGAACCTCCCATCCTCTCCTTTGAATTTTTCGAATACAT
Conservation Information
Conserved circRNAs osi_circ_014248
PMCS 0.30411137
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017