Detail information of 5_circ_ag.11


General Information
CircRNA Name 5_circ_ag.11
ID in PlantcircBase ath_circ_039375
Alias NA
Organism Arabidpsis thaliana
Position chr5: 6754020-6758310  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT5G19990_circ_g.1 5_circ_ag.2 5_circ_ag.3 AT5G19990_circ_g.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.7 5_circ_ag.8 5_circ_ag.9 AT5G19990_circ_g.10 5_circ_ag.12 5_circ_ag.13 5_circ_ag.14 AT5G20000_circ_g.1 AT5G20000_circ_g.2 AT5G20000_circ_g.3
Support reads 161
Tissues root, leaf, aerial, inflorescences, seed, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACACTGACTGTACTTTCATCAGAGTTTCTGGTTCTGAGCTGGTCCAGAAATACATTGGAGAAGG
TTCTAGAATGGTCAGAGAACTTTTTGTGATGGCAAGggagcatgcaccatcaatcatcttcatg
gatgaaatcgatagtattgggtctgctcgtatggaatctggaagtggaaatggtgacagtgagg
tgcaacgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAGCATGCACCATCAATCATCTTCATGGATGAAATCGATAGTATTGGGTCTGCTCGTATGGAA
TCTGGAAGTGGAAATGGTGACAGTGAGGTGCAACGGACCATGCTCGAGCTTCTCAATCAACTTG
ACGGTTTTGAAGCGTCAAACAAAATCAAGGTACCTATTAAGTTGTAAAGGAAAAAAAACCATAA
GTTGAATAGGATGAGTCTGTGTTATTGTAGTCTGAAATTGCTGACAGAGTCATATTCTCTTTAA
TGACTGTTGCAGGTTTTGATGGCTACAAATCGTATTGATATTCTGGATCAAGCTCTTCTCAGGC
CTGGAAGAATTGATAGGAAAATTGAATTTCCTAATCCTAATGAAGAGGTAATACTTGTGCTCTG
AGAAAATGATATTGACTGTTGTTTTTGGTGATATGAATACATTATTCGTCAAAGTAGGCACCTT
ATTTAGTATTTAGACTATCATTTGCAGCATAAAAAACTTTTCTTTATCTCCATACTCATTTTAC
TCAAGTGAGGCAGGACGGTTTGGCTAATGTATGTTTCCAAAATGTGTTGCAGTCACGTTTTGAC
ATCTTGAAGATTCACTCGAGGAAAATGAATTTGATGCGTGGAATCGATCTGAAAAAGATTGCAG
AGAAGATGAATGGCGCTTCAGGTGCTGAGCTGAAGGTAAAGTGTTTTCTATTTCTCTACTTCTA
TCTTGTTCTCTCTACATTTTGCCTCTCTCTTATGTTTTTGGTTAATACGGTCAGGCTGTGTGCA
CGGAGGCGGGAATGTTTGCTCTGCGTGAGAGGAGAGTACACGTGACACAAGAAGACTTTGAGAT
GGCGGTGGCCAAGGTAATGAAGAAAGACACGGAGAAGAACATGTCTCTGCGTAAGCTGTGGAAG
TAGGAATCTCTCATGGAAAGACTTTCTTTACTTTACTGTTTGTTGTTTGATTCTGAAACCTTTT
TTCGGTTGTCTCATGAAAACATTTTAGAACAAAGTTTTTACTATCTAGACACGAGTTTATCTAG
TATGCGATTTGAGGTCAATGGAAGGAAATTCCCAAAACTCAAGAACCTGAGCTTATAAGACCAA
AACAAGCAGAACCTTCACATGTTAAGAGTTCTTCTGTCCGAAACTGTCATATTCCATTAGAGAG
AAAAAGCCTATAATGTAAATGTTATGATAATTTATTTCAATTACAAATTTTACGCACGAATTTG
GTTTATTCGGTATGGTTTAGCTCGGTTACCAAAGTTTTGGTGTATGCTTAAGTTGTGGTTTTGG
ACTTTTTGTATTGCAGACTTATAAAATAACAAAACCAAGCGGTTTATAAATTTTGTTAATTTTG
GGTTGGTTCCGTCATTCCATTTTTTATTTTTCTCCCAAATAAAAAATCATATGAAATTAAACTT
AAAAAGAGCAAGATCTTTAATACAAGATCTTTAATACAAGTTTAGCAAAAAAAAGATCTTTAAT
ACAAATGATAACATAGTTACAAAATTATACAAAACATATGATATTAATGAATTATATAATACAC
AATAAGCAATGGAAAAGAAAAATACAATAGCTTATATCTTGTTCTCTGGACATTTTGCACCTTT
CTTATGTTTCCAGTTATTACGTTTAAACTTTGTGCACAGAAACGAAAATATTTGATATGCGTGA
GAGGAGAGTACACGTGACATAAGAATACTGAGATGGCGGTGGCGAAAGTAACGAAAAACACACA
CAAAGAAGAACAAGCCTCTGAGTAAGTTCTGGAAGTAGGAATCTCTTTGTTATGTAATTCAAGT
CAATGGAAAACCACATTTTCATTTCGGATATGACAAATTAGAGTTTCTTTACTTTGCTGTCGAT
TGCTGGTTTTGAAACCCTTTTTCGGTTGATTCATCAAACATTTTTAGATTAAGTTTTTATGACC
TAAATATTTTTTTTTTATATCTAAATGTGTCTTTAAAACGAACACATGTTCAAAGTTTTTATGT
CCAAATCAGTTATCATATTTGATTAGAGAGAAAAAAGCTATAAAGTTAATATTATTATAATTTA
ATTAATATGACTATTTTAGTAATAAAATCCTTCAACTAAAGATGAATCGTGAGAAAACCTATCA
ATTATTTATTTAGTGAAAAAACTCTAAACTTAAAATTTGTTAATGTAAATCCTCATCCATCTAT
ATTGTCGTGAAAATTGGACGGATTACAATTAAAATAAAATGTAATATTTTTCACAAATTGAAAA
ATAATAAATATACACTTAAACAATAAAAATTGTAAATAAAAACAACAAAATGTTCTTATTTATA
CCGAATCTAAATTTTCTAATTTATTTAAGCTCTAAAATTTAGAAAGTGAAAAATGAGATTTTTA
TAAGGTTTGTGTGTTGTCGAAGTCGATTCATTTTAATTTGACCCTAACCCGTCTAATTTTTATT
ACTAAAAATGAAGAGAGAATTGTATTAACAGAATTTAAATTAAAGGGTATTTTTACAATCATCT
TTAGTCGAGTGGTTTTATTACTAAAAACTTTTTTTTAAAATACAAATGTTTATGCAATAATATG
GTTTATTCGGTGTGGTTTTAGTTGGGTTACCCAAAAAAGTTTTAATAATAGGCTTTAGTTGTGG
TTTTGGTATTGCAGACATTAAAAATAACAAAACCAAGCGGTTTATAGACTCGGTTTATTTTGGG
TCGTTCGTTTTCCATTTTATTCTCACAAAATAAAAAATAGTAAATTGAACTTACAAAAAAAAAA
AAGATGTCTTGTTGGATAATCCAAGGTTCTTTTCTATATAAAGGTTCTTTGCTCATGATCTTAG
TCCCTGTGATCTATCTTTGAATCTCAAAAGCATACTTGAGAGAGATCTGTTTCGATAATTTGCT
TCAATCACCGTGTTAATGGCGGCCGTAGGAGTGGAGGCGAGACCTCCTGTGACAGCGATGGAGG
AAACCTGCAACGTTAAGGGAGCGGCGGCGAAACAAGGAGAAGGGCTTAACAAGTACTACCTCCA
GCATCTCGATGAGCTCCAGCGCCTGCAACGCGAAAAGTCGTATAACCTTAATCGTCTTGAAGCT
CAGAGGAATGAACTCAATTCTCGAGGTCTCTTTTTCCTTCTCTAACTCTAATTTTCATTGAATT
TCTTTGCAAAGTTGGATCTTTTGATCATCTTCTTAAGTTTAGTAATCTCGAATTCCATATTAGG
ACTTTAGATTTCGTCTGGGTGCTTTAAATTTATAAATTGTTGCGGTGATTGTTTGGATTGAGGG
TTTCTGATCTTTTCCAGAACTGGATCTAAACTATGCTGCGCCTTGATTTTTAGCATCACTAAGT
TACCCTATTGAGATTTCTTCTTGATTCTGTTTGTGTTGAGTATGAATCAGCTTCTGTCAATATT
TGATTGTTTAGCAAAGTATGTAGTGATTGATACAATCGATGTATACTGCTGAACATTTTAAACC
TTGTTGTCATTGTAAACTGAACAGTACGAATGCTCAGAGAAGAGTTACAGCTCCTTCAAGAACC
TGGGTCCTATGTGGGTGAAGTGGTAAAAGTGATGGGAAAAAACAAGGTCTTGGTTAAGGTATGA
ATGTTTTTATCGTATTATCTAGATTGGTTTTTGAATTGTTTGCAATCATATGAACATTGATAGA
ATAATACTTTCCCATGTTTCAGGTTCATCCAGAGGGGAAGTATGTTGTCGATATTGACAAAAGT
ATAGACATAACGAAACTCACTCCATCAACGAGAGTTGCTCTCCGTAATGATAGCTATGTTCTCC
ACCTGGTTCTGCCAAGTAAAGTAGATCCCTTGGTTAACCTTATGAAAGTTGAGAAGGTTCCAGA
CTCCACATATGACATGATTGGTGGTCTTGACCAGCAAATCAAGGAAATAAAGGAGGTATGCATA
GTGAAAGAAACAAACGATACTAAAAGTCACTGGTTTCATGCTTTTAAATTTTATATAATATCTT
TACTGGTTTATCAGGTCATTGAACTGCCAATCAAGCATCCTGAATTGTTTGAGTCTCTTGGAAT
TGCGCAGCCAAAGGTACACTTGAATTTCAAAGCTTATCTATATTGTGACGCTGCTAAGTGGATT
TCGAACTGATTGCTTCTCCCTCTCTTTTAAGGGTGTGTTGTTGTACGGTCCACCTGGAACTGGG
AAGACACTATTGGCTCGGGCTGTGGCACATCACACTGACTGTACTTTCATCAGAGTTTCTGGTT
CTGAGCTGGTCCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGAGAACTTTTTGTGATGGC
AAG
Conservation Information
Conserved circRNAs NA
PMCS 0.879510759
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017