Detail information of 5_circ_ag.13


General Information
CircRNA Name 5_circ_ag.13
ID in PlantcircBase ath_circ_039377
Alias At_ciR103
Organism Arabidpsis thaliana
Position chr5: 6754584-6759035  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT5G19990_circ_g.1 5_circ_ag.2 5_circ_ag.3 AT5G19990_circ_g.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.7 5_circ_ag.8 5_circ_ag.9 AT5G19990_circ_g.10 5_circ_ag.11 5_circ_ag.12 5_circ_ag.14 AT5G20000_circ_g.1 AT5G20000_circ_g.2 AT5G20000_circ_g.3
Support reads 64/46
Tissues leaf/root, aerial, inflorescences
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTTTTGATGGCTACAAATCGTATTGATATTCTGGATCAAGCTCTTCTCCGGCCTGGAAGGATT
GATAGGAAAATTGAATTTCCTAATCCTAATGAAGAGtcacgttttgacatcttgaagattcact
cgaggaaaatgaatttgatgcgtggaatcgatctgaaaaagattgcagagaagatgaatggcgc
ttcaggtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCACGTTTTGACATCTTGAAGATTCACTCGAGGAAAATGAATTTGATGCGTGGAATCGATCTGA
AAAAGATTGCAGAGAAGATGAATGGCGCTTCAGGTGCTGAGCTGAAGGTAAAGTGTTTTCTATT
TCTCTACTTCTATCTTGTTCTCTCTACATTTTGCCTCTCTCTTATGTTTTTGGTTAATACGGTC
AGGCTGTGTGCACGGAGGCGGGAATGTTTGCTCTGCGTGAGAGGAGAGTACACGTGACACAAGA
AGACTTTGAGATGGCGGTGGCCAAGGTAATGAAGAAAGACACGGAGAAGAACATGTCTCTGCGT
AAGCTGTGGAAGTAGGAATCTCTCATGGAAAGACTTTCTTTACTTTACTGTTTGTTGTTTGATT
CTGAAACCTTTTTTCGGTTGTCTCATGAAAACATTTTAGAACAAAGTTTTTACTATCTAGACAC
GAGTTTATCTAGTATGCGATTTGAGGTCAATGGAAGGAAATTCCCAAAACTCAAGAACCTGAGC
TTATAAGACCAAAACAAGCAGAACCTTCACATGTTAAGAGTTCTTCTGTCCGAAACTGTCATAT
TCCATTAGAGAGAAAAAGCCTATAATGTAAATGTTATGATAATTTATTTCAATTACAAATTTTA
CGCACGAATTTGGTTTATTCGGTATGGTTTAGCTCGGTTACCAAAGTTTTGGTGTATGCTTAAG
TTGTGGTTTTGGACTTTTTGTATTGCAGACTTATAAAATAACAAAACCAAGCGGTTTATAAATT
TTGTTAATTTTGGGTTGGTTCCGTCATTCCATTTTTTATTTTTCTCCCAAATAAAAAATCATAT
GAAATTAAACTTAAAAAGAGCAAGATCTTTAATACAAGATCTTTAATACAAGTTTAGCAAAAAA
AAGATCTTTAATACAAATGATAACATAGTTACAAAATTATACAAAACATATGATATTAATGAAT
TATATAATACACAATAAGCAATGGAAAAGAAAAATACAATAGCTTATATCTTGTTCTCTGGACA
TTTTGCACCTTTCTTATGTTTCCAGTTATTACGTTTAAACTTTGTGCACAGAAACGAAAATATT
TGATATGCGTGAGAGGAGAGTACACGTGACATAAGAATACTGAGATGGCGGTGGCGAAAGTAAC
GAAAAACACACACAAAGAAGAACAAGCCTCTGAGTAAGTTCTGGAAGTAGGAATCTCTTTGTTA
TGTAATTCAAGTCAATGGAAAACCACATTTTCATTTCGGATATGACAAATTAGAGTTTCTTTAC
TTTGCTGTCGATTGCTGGTTTTGAAACCCTTTTTCGGTTGATTCATCAAACATTTTTAGATTAA
GTTTTTATGACCTAAATATTTTTTTTTTATATCTAAATGTGTCTTTAAAACGAACACATGTTCA
AAGTTTTTATGTCCAAATCAGTTATCATATTTGATTAGAGAGAAAAAAGCTATAAAGTTAATAT
TATTATAATTTAATTAATATGACTATTTTAGTAATAAAATCCTTCAACTAAAGATGAATCGTGA
GAAAACCTATCAATTATTTATTTAGTGAAAAAACTCTAAACTTAAAATTTGTTAATGTAAATCC
TCATCCATCTATATTGTCGTGAAAATTGGACGGATTACAATTAAAATAAAATGTAATATTTTTC
ACAAATTGAAAAATAATAAATATACACTTAAACAATAAAAATTGTAAATAAAAACAACAAAATG
TTCTTATTTATACCGAATCTAAATTTTCTAATTTATTTAAGCTCTAAAATTTAGAAAGTGAAAA
ATGAGATTTTTATAAGGTTTGTGTGTTGTCGAAGTCGATTCATTTTAATTTGACCCTAACCCGT
CTAATTTTTATTACTAAAAATGAAGAGAGAATTGTATTAACAGAATTTAAATTAAAGGGTATTT
TTACAATCATCTTTAGTCGAGTGGTTTTATTACTAAAAACTTTTTTTTAAAATACAAATGTTTA
TGCAATAATATGGTTTATTCGGTGTGGTTTTAGTTGGGTTACCCAAAAAAGTTTTAATAATAGG
CTTTAGTTGTGGTTTTGGTATTGCAGACATTAAAAATAACAAAACCAAGCGGTTTATAGACTCG
GTTTATTTTGGGTCGTTCGTTTTCCATTTTATTCTCACAAAATAAAAAATAGTAAATTGAACTT
ACAAAAAAAAAAAAGATGTCTTGTTGGATAATCCAAGGTTCTTTTCTATATAAAGGTTCTTTGC
TCATGATCTTAGTCCCTGTGATCTATCTTTGAATCTCAAAAGCATACTTGAGAGAGATCTGTTT
CGATAATTTGCTTCAATCACCGTGTTAATGGCGGCCGTAGGAGTGGAGGCGAGACCTCCTGTGA
CAGCGATGGAGGAAACCTGCAACGTTAAGGGAGCGGCGGCGAAACAAGGAGAAGGGCTTAACAA
GTACTACCTCCAGCATCTCGATGAGCTCCAGCGCCTGCAACGCGAAAAGTCGTATAACCTTAAT
CGTCTTGAAGCTCAGAGGAATGAACTCAATTCTCGAGGTCTCTTTTTCCTTCTCTAACTCTAAT
TTTCATTGAATTTCTTTGCAAAGTTGGATCTTTTGATCATCTTCTTAAGTTTAGTAATCTCGAA
TTCCATATTAGGACTTTAGATTTCGTCTGGGTGCTTTAAATTTATAAATTGTTGCGGTGATTGT
TTGGATTGAGGGTTTCTGATCTTTTCCAGAACTGGATCTAAACTATGCTGCGCCTTGATTTTTA
GCATCACTAAGTTACCCTATTGAGATTTCTTCTTGATTCTGTTTGTGTTGAGTATGAATCAGCT
TCTGTCAATATTTGATTGTTTAGCAAAGTATGTAGTGATTGATACAATCGATGTATACTGCTGA
ACATTTTAAACCTTGTTGTCATTGTAAACTGAACAGTACGAATGCTCAGAGAAGAGTTACAGCT
CCTTCAAGAACCTGGGTCCTATGTGGGTGAAGTGGTAAAAGTGATGGGAAAAAACAAGGTCTTG
GTTAAGGTATGAATGTTTTTATCGTATTATCTAGATTGGTTTTTGAATTGTTTGCAATCATATG
AACATTGATAGAATAATACTTTCCCATGTTTCAGGTTCATCCAGAGGGGAAGTATGTTGTCGAT
ATTGACAAAAGTATAGACATAACGAAACTCACTCCATCAACGAGAGTTGCTCTCCGTAATGATA
GCTATGTTCTCCACCTGGTTCTGCCAAGTAAAGTAGATCCCTTGGTTAACCTTATGAAAGTTGA
GAAGGTTCCAGACTCCACATATGACATGATTGGTGGTCTTGACCAGCAAATCAAGGAAATAAAG
GAGGTATGCATAGTGAAAGAAACAAACGATACTAAAAGTCACTGGTTTCATGCTTTTAAATTTT
ATATAATATCTTTACTGGTTTATCAGGTCATTGAACTGCCAATCAAGCATCCTGAATTGTTTGA
GTCTCTTGGAATTGCGCAGCCAAAGGTACACTTGAATTTCAAAGCTTATCTATATTGTGACGCT
GCTAAGTGGATTTCGAACTGATTGCTTCTCCCTCTCTTTTAAGGGTGTGTTGTTGTACGGTCCA
CCTGGAACTGGGAAGACACTATTGGCTCGGGCTGTGGCACATCACACTGACTGTACTTTCATCA
GAGTTTCTGGTTCTGAGCTGGTCCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGAGAACT
TTTTGTGATGGCAAGGTTTGTACATGCTAGTCCTTATTTAATATTTCAAGCATGGTAAAAGTGG
TAGGTTGGAAAAGATGGAACTTTTGACACGATAAATCTTTTACATGCCCGTGCTTAGTAGCTGT
AGTGGACATGTGGAGTAAAATAAATTGAGTAAATTGTTCTCTGTTCCTGCTATGAATATGGTTT
CAACATGTATACGATCTCAAGCATAATGATCTTTACAAGTAGTCTCGATGCCTAGCATTTAGGC
CACAGTAATAGTCTTTTGTAATGAGCAAAGTATACACCATTAATCATCTTCATTGTGCTGAAAA
ATACTTATTCCAGCTAGCTTACCTTTCTAGTACCTCTGGCTTATGGTTTTCAGGGAGCATGCAC
CATCAATCATCTTCATGGATGAAATCGATAGTATCGGGTCTGCTCGTATGGAATCTGGTAGTGG
AAATGGTGACAGTGAGGTGCAAAGGACTATGCTTGAGCTTCTCAATCAACTTGACGGATTCGAG
GCGTCAAACAAAATCAAGGTATGCCTTATGTTGTGAATGAAAAAATAGTCATGAAGCTGAAAAG
GATAACTCTGTGTTACTCTGAATTTCGCAGACAAAGTTGTTAATTCTCTTAAATGACTGTTGCA
GGTTTTGATGGCTACAAATCGTATTGATATTCTGGATCAAGCTCTTCTCCGGCCTGGAAGGATT
GATAGGAAAATTGAATTTCCTAATCCTAATGAAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.663971286
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017