Detailed infomation of each circRNA
General Information | |
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CircRNA Name | 5_circ_ag.5 |
ID in PlantcircBase | ath_circ_039369 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr5: 6753029-6757597 JBrowse» |
Reference genome | TAIR10.38 |
Type | ag-circRNA |
Identification method | CIRI, SMALT, Segemehl |
Parent gene | NA |
Parent gene annotation | NA |
Parent gene strand | NA |
Alternative splicing | AT5G19990_circ_g.1 5_circ_ag.2 5_circ_ag.3 AT5G19990_circ_g.4 5_circ_ag.6 5_circ_ag.7 5_circ_ag.8 5_circ_ag.9 AT5G19990_circ_g.10 5_circ_ag.11 5_circ_ag.12 5_circ_ag.13 5_circ_ag.14 AT5G20000_circ_g.1 AT5G20000_circ_g.2 AT5G20000_circ_g.3 |
Support reads | 12/3 |
Tissues | siliques and seeds/root, inflorescences |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | NA |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.835688512 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015;Chu et al., 2017 |