Detail information of 5_circ_ag.9


General Information
CircRNA Name 5_circ_ag.9
ID in PlantcircBase ath_circ_039373
Alias Chr5:6754019|6758310
Organism Arabidpsis thaliana
Position chr5: 6754019-6758310  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRCexplorer; CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT5G19990_circ_g.1 5_circ_ag.2 5_circ_ag.3 AT5G19990_circ_g.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.7 5_circ_ag.8 AT5G19990_circ_g.10 5_circ_ag.11 5_circ_ag.12 5_circ_ag.13 5_circ_ag.14 AT5G20000_circ_g.1 AT5G20000_circ_g.2 AT5G20000_circ_g.3
Support reads 3
Tissues seedling
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACACTGACTGTACTTTCATCAGAGTTTCTGGTTCTGAGCTGGTCCAGAAATACATTGGAGAAGG
TTCTAGAATGGTCAGAGAACTTTTTGTGATGGCAAGgggagcatgcaccatcaatcatcttcat
ggatgaaatcgatagtattgggtctgctcgtatggaatctggaagtggaaatggtgacagtgag
gtgcaacg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGAGCATGCACCATCAATCATCTTCATGGATGAAATCGATAGTATTGGGTCTGCTCGTATGGA
ATCTGGAAGTGGAAATGGTGACAGTGAGGTGCAACGGACCATGCTCGAGCTTCTCAATCAACTT
GACGGTTTTGAAGCGTCAAACAAAATCAAGGTACCTATTAAGTTGTAAAGGAAAAAAAACCATA
AGTTGAATAGGATGAGTCTGTGTTATTGTAGTCTGAAATTGCTGACAGAGTCATATTCTCTTTA
ATGACTGTTGCAGGTTTTGATGGCTACAAATCGTATTGATATTCTGGATCAAGCTCTTCTCAGG
CCTGGAAGAATTGATAGGAAAATTGAATTTCCTAATCCTAATGAAGAGGTAATACTTGTGCTCT
GAGAAAATGATATTGACTGTTGTTTTTGGTGATATGAATACATTATTCGTCAAAGTAGGCACCT
TATTTAGTATTTAGACTATCATTTGCAGCATAAAAAACTTTTCTTTATCTCCATACTCATTTTA
CTCAAGTGAGGCAGGACGGTTTGGCTAATGTATGTTTCCAAAATGTGTTGCAGTCACGTTTTGA
CATCTTGAAGATTCACTCGAGGAAAATGAATTTGATGCGTGGAATCGATCTGAAAAAGATTGCA
GAGAAGATGAATGGCGCTTCAGGTGCTGAGCTGAAGGTAAAGTGTTTTCTATTTCTCTACTTCT
ATCTTGTTCTCTCTACATTTTGCCTCTCTCTTATGTTTTTGGTTAATACGGTCAGGCTGTGTGC
ACGGAGGCGGGAATGTTTGCTCTGCGTGAGAGGAGAGTACACGTGACACAAGAAGACTTTGAGA
TGGCGGTGGCCAAGGTAATGAAGAAAGACACGGAGAAGAACATGTCTCTGCGTAAGCTGTGGAA
GTAGGAATCTCTCATGGAAAGACTTTCTTTACTTTACTGTTTGTTGTTTGATTCTGAAACCTTT
TTTCGGTTGTCTCATGAAAACATTTTAGAACAAAGTTTTTACTATCTAGACACGAGTTTATCTA
GTATGCGATTTGAGGTCAATGGAAGGAAATTCCCAAAACTCAAGAACCTGAGCTTATAAGACCA
AAACAAGCAGAACCTTCACATGTTAAGAGTTCTTCTGTCCGAAACTGTCATATTCCATTAGAGA
GAAAAAGCCTATAATGTAAATGTTATGATAATTTATTTCAATTACAAATTTTACGCACGAATTT
GGTTTATTCGGTATGGTTTAGCTCGGTTACCAAAGTTTTGGTGTATGCTTAAGTTGTGGTTTTG
GACTTTTTGTATTGCAGACTTATAAAATAACAAAACCAAGCGGTTTATAAATTTTGTTAATTTT
GGGTTGGTTCCGTCATTCCATTTTTTATTTTTCTCCCAAATAAAAAATCATATGAAATTAAACT
TAAAAAGAGCAAGATCTTTAATACAAGATCTTTAATACAAGTTTAGCAAAAAAAAGATCTTTAA
TACAAATGATAACATAGTTACAAAATTATACAAAACATATGATATTAATGAATTATATAATACA
CAATAAGCAATGGAAAAGAAAAATACAATAGCTTATATCTTGTTCTCTGGACATTTTGCACCTT
TCTTATGTTTCCAGTTATTACGTTTAAACTTTGTGCACAGAAACGAAAATATTTGATATGCGTG
AGAGGAGAGTACACGTGACATAAGAATACTGAGATGGCGGTGGCGAAAGTAACGAAAAACACAC
ACAAAGAAGAACAAGCCTCTGAGTAAGTTCTGGAAGTAGGAATCTCTTTGTTATGTAATTCAAG
TCAATGGAAAACCACATTTTCATTTCGGATATGACAAATTAGAGTTTCTTTACTTTGCTGTCGA
TTGCTGGTTTTGAAACCCTTTTTCGGTTGATTCATCAAACATTTTTAGATTAAGTTTTTATGAC
CTAAATATTTTTTTTTTATATCTAAATGTGTCTTTAAAACGAACACATGTTCAAAGTTTTTATG
TCCAAATCAGTTATCATATTTGATTAGAGAGAAAAAAGCTATAAAGTTAATATTATTATAATTT
AATTAATATGACTATTTTAGTAATAAAATCCTTCAACTAAAGATGAATCGTGAGAAAACCTATC
AATTATTTATTTAGTGAAAAAACTCTAAACTTAAAATTTGTTAATGTAAATCCTCATCCATCTA
TATTGTCGTGAAAATTGGACGGATTACAATTAAAATAAAATGTAATATTTTTCACAAATTGAAA
AATAATAAATATACACTTAAACAATAAAAATTGTAAATAAAAACAACAAAATGTTCTTATTTAT
ACCGAATCTAAATTTTCTAATTTATTTAAGCTCTAAAATTTAGAAAGTGAAAAATGAGATTTTT
ATAAGGTTTGTGTGTTGTCGAAGTCGATTCATTTTAATTTGACCCTAACCCGTCTAATTTTTAT
TACTAAAAATGAAGAGAGAATTGTATTAACAGAATTTAAATTAAAGGGTATTTTTACAATCATC
TTTAGTCGAGTGGTTTTATTACTAAAAACTTTTTTTTAAAATACAAATGTTTATGCAATAATAT
GGTTTATTCGGTGTGGTTTTAGTTGGGTTACCCAAAAAAGTTTTAATAATAGGCTTTAGTTGTG
GTTTTGGTATTGCAGACATTAAAAATAACAAAACCAAGCGGTTTATAGACTCGGTTTATTTTGG
GTCGTTCGTTTTCCATTTTATTCTCACAAAATAAAAAATAGTAAATTGAACTTACAAAAAAAAA
AAAGATGTCTTGTTGGATAATCCAAGGTTCTTTTCTATATAAAGGTTCTTTGCTCATGATCTTA
GTCCCTGTGATCTATCTTTGAATCTCAAAAGCATACTTGAGAGAGATCTGTTTCGATAATTTGC
TTCAATCACCGTGTTAATGGCGGCCGTAGGAGTGGAGGCGAGACCTCCTGTGACAGCGATGGAG
GAAACCTGCAACGTTAAGGGAGCGGCGGCGAAACAAGGAGAAGGGCTTAACAAGTACTACCTCC
AGCATCTCGATGAGCTCCAGCGCCTGCAACGCGAAAAGTCGTATAACCTTAATCGTCTTGAAGC
TCAGAGGAATGAACTCAATTCTCGAGGTCTCTTTTTCCTTCTCTAACTCTAATTTTCATTGAAT
TTCTTTGCAAAGTTGGATCTTTTGATCATCTTCTTAAGTTTAGTAATCTCGAATTCCATATTAG
GACTTTAGATTTCGTCTGGGTGCTTTAAATTTATAAATTGTTGCGGTGATTGTTTGGATTGAGG
GTTTCTGATCTTTTCCAGAACTGGATCTAAACTATGCTGCGCCTTGATTTTTAGCATCACTAAG
TTACCCTATTGAGATTTCTTCTTGATTCTGTTTGTGTTGAGTATGAATCAGCTTCTGTCAATAT
TTGATTGTTTAGCAAAGTATGTAGTGATTGATACAATCGATGTATACTGCTGAACATTTTAAAC
CTTGTTGTCATTGTAAACTGAACAGTACGAATGCTCAGAGAAGAGTTACAGCTCCTTCAAGAAC
CTGGGTCCTATGTGGGTGAAGTGGTAAAAGTGATGGGAAAAAACAAGGTCTTGGTTAAGGTATG
AATGTTTTTATCGTATTATCTAGATTGGTTTTTGAATTGTTTGCAATCATATGAACATTGATAG
AATAATACTTTCCCATGTTTCAGGTTCATCCAGAGGGGAAGTATGTTGTCGATATTGACAAAAG
TATAGACATAACGAAACTCACTCCATCAACGAGAGTTGCTCTCCGTAATGATAGCTATGTTCTC
CACCTGGTTCTGCCAAGTAAAGTAGATCCCTTGGTTAACCTTATGAAAGTTGAGAAGGTTCCAG
ACTCCACATATGACATGATTGGTGGTCTTGACCAGCAAATCAAGGAAATAAAGGAGGTATGCAT
AGTGAAAGAAACAAACGATACTAAAAGTCACTGGTTTCATGCTTTTAAATTTTATATAATATCT
TTACTGGTTTATCAGGTCATTGAACTGCCAATCAAGCATCCTGAATTGTTTGAGTCTCTTGGAA
TTGCGCAGCCAAAGGTACACTTGAATTTCAAAGCTTATCTATATTGTGACGCTGCTAAGTGGAT
TTCGAACTGATTGCTTCTCCCTCTCTTTTAAGGGTGTGTTGTTGTACGGTCCACCTGGAACTGG
GAAGACACTATTGGCTCGGGCTGTGGCACATCACACTGACTGTACTTTCATCAGAGTTTCTGGT
TCTGAGCTGGTCCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGAGAACTTTTTGTGATGG
CAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.138465538
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to methyl jasmonate
Other Information
References Zhang et al., 2020