Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | 5_circ_ag.9 |
| ID in PlantcircBase | ath_circ_039373 |
| Alias | Chr5:6754019|6758310 |
| Organism | Arabidpsis thaliana |
| Position | chr5: 6754019-6758310 JBrowse» |
| Reference genome | TAIR10.38 |
| Type | ag-circRNA |
| Identification method | CIRCexplorer; CIRI |
| Parent gene | NA |
| Parent gene annotation | NA |
| Parent gene strand | NA |
| Alternative splicing | AT5G19990_circ_g.1 5_circ_ag.2 5_circ_ag.3 AT5G19990_circ_g.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.7 5_circ_ag.8 AT5G19990_circ_g.10 5_circ_ag.11 5_circ_ag.12 5_circ_ag.13 5_circ_ag.14 AT5G20000_circ_g.1 AT5G20000_circ_g.2 AT5G20000_circ_g.3 |
| Support reads | 3 |
| Tissues | seedling |
| Exon boundary | NA-NA |
| Splicing signals | GT-CA |
| Number of exons covered | NA |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.138465538 |
| Functional Information | |
|---|---|
| Coding potential | NA |
| Potential coding position |
NA |
| Potential amino acid sequence |
NA |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | responsive to methyl jasmonate |
| Other Information | |
|---|---|
| References | Zhang et al., 2020 |