Detailed infomation of each circRNA
General Information | |
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CircRNA Name | 5_circ_ag.9 |
ID in PlantcircBase | ath_circ_039373 |
Alias | Chr5:6754019|6758310 |
Organism | Arabidpsis thaliana |
Position | chr5: 6754019-6758310 JBrowse» |
Reference genome | TAIR10.38 |
Type | ag-circRNA |
Identification method | CIRCexplorer; CIRI |
Parent gene | NA |
Parent gene annotation | NA |
Parent gene strand | NA |
Alternative splicing | AT5G19990_circ_g.1 5_circ_ag.2 5_circ_ag.3 AT5G19990_circ_g.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.7 5_circ_ag.8 AT5G19990_circ_g.10 5_circ_ag.11 5_circ_ag.12 5_circ_ag.13 5_circ_ag.14 AT5G20000_circ_g.1 AT5G20000_circ_g.2 AT5G20000_circ_g.3 |
Support reads | 3 |
Tissues | seedling |
Exon boundary | NA-NA |
Splicing signals | GT-CA |
Number of exons covered | NA |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.138465538 |
Functional Information | |
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Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to methyl jasmonate |
Other Information | |
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References | Zhang et al., 2020 |