Detail information of 5_circ_ag.12


General Information
CircRNA Name 5_circ_ag.12
ID in PlantcircBase ath_circ_039376
Alias NA
Organism Arabidpsis thaliana
Position chr5: 6754288-6758825  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT5G19990_circ_g.1 5_circ_ag.2 5_circ_ag.3 AT5G19990_circ_g.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.7 5_circ_ag.8 5_circ_ag.9 AT5G19990_circ_g.10 5_circ_ag.11 5_circ_ag.13 5_circ_ag.14 AT5G20000_circ_g.1 AT5G20000_circ_g.2 AT5G20000_circ_g.3
Support reads 35
Tissues root, aerial, inflorescences, seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATGGAATCTGGTAGTGGAAATGGTGACAGTGAGGTGCAAAGGACTATGCTTGAGCTTCTCAAT
CAACTTGACGGATTCGAGGCGTCAAACAAAATCAAGgttttgatggctacaaatcgtattgata
ttctggatcaagctcttctcaggcctggaagaattgataggaaaattgaatttcctaatcctaa
tgaagagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTTGATGGCTACAAATCGTATTGATATTCTGGATCAAGCTCTTCTCAGGCCTGGAAGAATTG
ATAGGAAAATTGAATTTCCTAATCCTAATGAAGAGGTAATACTTGTGCTCTGAGAAAATGATAT
TGACTGTTGTTTTTGGTGATATGAATACATTATTCGTCAAAGTAGGCACCTTATTTAGTATTTA
GACTATCATTTGCAGCATAAAAAACTTTTCTTTATCTCCATACTCATTTTACTCAAGTGAGGCA
GGACGGTTTGGCTAATGTATGTTTCCAAAATGTGTTGCAGTCACGTTTTGACATCTTGAAGATT
CACTCGAGGAAAATGAATTTGATGCGTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATG
GCGCTTCAGGTGCTGAGCTGAAGGTAAAGTGTTTTCTATTTCTCTACTTCTATCTTGTTCTCTC
TACATTTTGCCTCTCTCTTATGTTTTTGGTTAATACGGTCAGGCTGTGTGCACGGAGGCGGGAA
TGTTTGCTCTGCGTGAGAGGAGAGTACACGTGACACAAGAAGACTTTGAGATGGCGGTGGCCAA
GGTAATGAAGAAAGACACGGAGAAGAACATGTCTCTGCGTAAGCTGTGGAAGTAGGAATCTCTC
ATGGAAAGACTTTCTTTACTTTACTGTTTGTTGTTTGATTCTGAAACCTTTTTTCGGTTGTCTC
ATGAAAACATTTTAGAACAAAGTTTTTACTATCTAGACACGAGTTTATCTAGTATGCGATTTGA
GGTCAATGGAAGGAAATTCCCAAAACTCAAGAACCTGAGCTTATAAGACCAAAACAAGCAGAAC
CTTCACATGTTAAGAGTTCTTCTGTCCGAAACTGTCATATTCCATTAGAGAGAAAAAGCCTATA
ATGTAAATGTTATGATAATTTATTTCAATTACAAATTTTACGCACGAATTTGGTTTATTCGGTA
TGGTTTAGCTCGGTTACCAAAGTTTTGGTGTATGCTTAAGTTGTGGTTTTGGACTTTTTGTATT
GCAGACTTATAAAATAACAAAACCAAGCGGTTTATAAATTTTGTTAATTTTGGGTTGGTTCCGT
CATTCCATTTTTTATTTTTCTCCCAAATAAAAAATCATATGAAATTAAACTTAAAAAGAGCAAG
ATCTTTAATACAAGATCTTTAATACAAGTTTAGCAAAAAAAAGATCTTTAATACAAATGATAAC
ATAGTTACAAAATTATACAAAACATATGATATTAATGAATTATATAATACACAATAAGCAATGG
AAAAGAAAAATACAATAGCTTATATCTTGTTCTCTGGACATTTTGCACCTTTCTTATGTTTCCA
GTTATTACGTTTAAACTTTGTGCACAGAAACGAAAATATTTGATATGCGTGAGAGGAGAGTACA
CGTGACATAAGAATACTGAGATGGCGGTGGCGAAAGTAACGAAAAACACACACAAAGAAGAACA
AGCCTCTGAGTAAGTTCTGGAAGTAGGAATCTCTTTGTTATGTAATTCAAGTCAATGGAAAACC
ACATTTTCATTTCGGATATGACAAATTAGAGTTTCTTTACTTTGCTGTCGATTGCTGGTTTTGA
AACCCTTTTTCGGTTGATTCATCAAACATTTTTAGATTAAGTTTTTATGACCTAAATATTTTTT
TTTTATATCTAAATGTGTCTTTAAAACGAACACATGTTCAAAGTTTTTATGTCCAAATCAGTTA
TCATATTTGATTAGAGAGAAAAAAGCTATAAAGTTAATATTATTATAATTTAATTAATATGACT
ATTTTAGTAATAAAATCCTTCAACTAAAGATGAATCGTGAGAAAACCTATCAATTATTTATTTA
GTGAAAAAACTCTAAACTTAAAATTTGTTAATGTAAATCCTCATCCATCTATATTGTCGTGAAA
ATTGGACGGATTACAATTAAAATAAAATGTAATATTTTTCACAAATTGAAAAATAATAAATATA
CACTTAAACAATAAAAATTGTAAATAAAAACAACAAAATGTTCTTATTTATACCGAATCTAAAT
TTTCTAATTTATTTAAGCTCTAAAATTTAGAAAGTGAAAAATGAGATTTTTATAAGGTTTGTGT
GTTGTCGAAGTCGATTCATTTTAATTTGACCCTAACCCGTCTAATTTTTATTACTAAAAATGAA
GAGAGAATTGTATTAACAGAATTTAAATTAAAGGGTATTTTTACAATCATCTTTAGTCGAGTGG
TTTTATTACTAAAAACTTTTTTTTAAAATACAAATGTTTATGCAATAATATGGTTTATTCGGTG
TGGTTTTAGTTGGGTTACCCAAAAAAGTTTTAATAATAGGCTTTAGTTGTGGTTTTGGTATTGC
AGACATTAAAAATAACAAAACCAAGCGGTTTATAGACTCGGTTTATTTTGGGTCGTTCGTTTTC
CATTTTATTCTCACAAAATAAAAAATAGTAAATTGAACTTACAAAAAAAAAAAAGATGTCTTGT
TGGATAATCCAAGGTTCTTTTCTATATAAAGGTTCTTTGCTCATGATCTTAGTCCCTGTGATCT
ATCTTTGAATCTCAAAAGCATACTTGAGAGAGATCTGTTTCGATAATTTGCTTCAATCACCGTG
TTAATGGCGGCCGTAGGAGTGGAGGCGAGACCTCCTGTGACAGCGATGGAGGAAACCTGCAACG
TTAAGGGAGCGGCGGCGAAACAAGGAGAAGGGCTTAACAAGTACTACCTCCAGCATCTCGATGA
GCTCCAGCGCCTGCAACGCGAAAAGTCGTATAACCTTAATCGTCTTGAAGCTCAGAGGAATGAA
CTCAATTCTCGAGGTCTCTTTTTCCTTCTCTAACTCTAATTTTCATTGAATTTCTTTGCAAAGT
TGGATCTTTTGATCATCTTCTTAAGTTTAGTAATCTCGAATTCCATATTAGGACTTTAGATTTC
GTCTGGGTGCTTTAAATTTATAAATTGTTGCGGTGATTGTTTGGATTGAGGGTTTCTGATCTTT
TCCAGAACTGGATCTAAACTATGCTGCGCCTTGATTTTTAGCATCACTAAGTTACCCTATTGAG
ATTTCTTCTTGATTCTGTTTGTGTTGAGTATGAATCAGCTTCTGTCAATATTTGATTGTTTAGC
AAAGTATGTAGTGATTGATACAATCGATGTATACTGCTGAACATTTTAAACCTTGTTGTCATTG
TAAACTGAACAGTACGAATGCTCAGAGAAGAGTTACAGCTCCTTCAAGAACCTGGGTCCTATGT
GGGTGAAGTGGTAAAAGTGATGGGAAAAAACAAGGTCTTGGTTAAGGTATGAATGTTTTTATCG
TATTATCTAGATTGGTTTTTGAATTGTTTGCAATCATATGAACATTGATAGAATAATACTTTCC
CATGTTTCAGGTTCATCCAGAGGGGAAGTATGTTGTCGATATTGACAAAAGTATAGACATAACG
AAACTCACTCCATCAACGAGAGTTGCTCTCCGTAATGATAGCTATGTTCTCCACCTGGTTCTGC
CAAGTAAAGTAGATCCCTTGGTTAACCTTATGAAAGTTGAGAAGGTTCCAGACTCCACATATGA
CATGATTGGTGGTCTTGACCAGCAAATCAAGGAAATAAAGGAGGTATGCATAGTGAAAGAAACA
AACGATACTAAAAGTCACTGGTTTCATGCTTTTAAATTTTATATAATATCTTTACTGGTTTATC
AGGTCATTGAACTGCCAATCAAGCATCCTGAATTGTTTGAGTCTCTTGGAATTGCGCAGCCAAA
GGTACACTTGAATTTCAAAGCTTATCTATATTGTGACGCTGCTAAGTGGATTTCGAACTGATTG
CTTCTCCCTCTCTTTTAAGGGTGTGTTGTTGTACGGTCCACCTGGAACTGGGAAGACACTATTG
GCTCGGGCTGTGGCACATCACACTGACTGTACTTTCATCAGAGTTTCTGGTTCTGAGCTGGTCC
AGAAATACATTGGAGAAGGTTCTAGAATGGTCAGAGAACTTTTTGTGATGGCAAGGTTTGTACA
TGCTAGTCCTTATTTAATATTTCAAGCATGGTAAAAGTGGTAGGTTGGAAAAGATGGAACTTTT
GACACGATAAATCTTTTACATGCCCGTGCTTAGTAGCTGTAGTGGACATGTGGAGTAAAATAAA
TTGAGTAAATTGTTCTCTGTTCCTGCTATGAATATGGTTTCAACATGTATACGATCTCAAGCAT
AATGATCTTTACAAGTAGTCTCGATGCCTAGCATTTAGGCCACAGTAATAGTCTTTTGTAATGA
GCAAAGTATACACCATTAATCATCTTCATTGTGCTGAAAAATACTTATTCCAGCTAGCTTACCT
TTCTAGTACCTCTGGCTTATGGTTTTCAGGGAGCATGCACCATCAATCATCTTCATGGATGAAA
TCGATAGTATCGGGTCTGCTCGTATGGAATCTGGTAGTGGAAATGGTGACAGTGAGGTGCAAAG
GACTATGCTTGAGCTTCTCAATCAACTTGACGGATTCGAGGCGTCAAACAAAATCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.82038922
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017