Detail information of 5_circ_ag.14


General Information
CircRNA Name 5_circ_ag.14
ID in PlantcircBase ath_circ_039378
Alias At_ciR69
Organism Arabidpsis thaliana
Position chr5: 6754778-6759330  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT5G19990_circ_g.1 5_circ_ag.2 5_circ_ag.3 AT5G19990_circ_g.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.7 5_circ_ag.8 5_circ_ag.9 AT5G19990_circ_g.10 5_circ_ag.11 5_circ_ag.12 5_circ_ag.13 AT5G20000_circ_g.1 AT5G20000_circ_g.2 AT5G20000_circ_g.3
Support reads 106/74
Tissues leaf/root, leaf, aerial, inflorescences, seed, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATCTTGAAGATACACTCAAGGAAAATGAATTTGATGCGTGGAATCGATCTGAAAAAGATTGCA
GAGAAGATGAATGGTGCTTCAGGTGCTGAGCTGAAGgctgtgtgcacggaggcgggaatgtttg
ctctgcgtgagaggagagtacacgtgacacaagaagactttgagatggcggtggccaaggtaat
gaagaaag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1228
Transcript exons: 6754778-6754951,6756930-6757116,6757498-6757599,6757688-
6757916,6758000-6758066,6758143-6758312,6758666-6758828,
6758935-6759035,6759296-6759330
GCTGTGTGCACGGAGGCGGGAATGTTTGCTCTGCGTGAGAGGAGAGTACACGTGACACAAGAAG
ACTTTGAGATGGCGGTGGCCAAGGTAATGAAGAAAGACACGGAGAAGAACATGTCTCTGCGTAA
GCTGTGGAAGTAGGAATCTCTCATGGAAAGACTTTCTTTACTTTACGTGGAGGCGAGACCTCCT
GTGACAGCGATGGAGGAAACCTGCAACGTTAAGGGAGCGGCGGCGAAACAAGGAGAAGGGCTTA
ACAAGTACTACCTCCAGCATCTCGATGAGCTCCAGCGCCTGCAACGCGAAAAGTCGTATAACCT
TAATCGTCTTGAAGCTCAGAGGAATGAACTCAATTCTCGAGAGTACGAATGCTCAGAGAAGAGT
TACAGCTCCTTCAAGAACCTGGGTCCTATGTGGGTGAAGTGGTAAAAGTGATGGGAAAAAACAA
GGTCTTGGTTAAGGTAGGTTCATCCAGAGGGGAAGTATGTTGTCGATATTGACAAAAGTATAGA
CATAACGAAACTCACTCCATCAACGAGAGTTGCTCTCCGTAATGATAGCTATGTTCTCCACCTG
GTTCTGCCAAGTAAAGTAGATCCCTTGGTTAACCTTATGAAAGTTGAGAAGGTTCCAGACTCCA
CATATGACATGATTGGTGGTCTTGACCAGCAAATCAAGGAAATAAAGGAGGTAGGTCATTGAAC
TGCCAATCAAGCATCCTGAATTGTTTGAGTCTCTTGGAATTGCGCAGCCAAAGGTTAAGGGTGT
GTTGTTGTACGGTCCACCTGGAACTGGGAAGACACTATTGGCTCGGGCTGTGGCACATCACACT
GACTGTACTTTCATCAGAGTTTCTGGTTCTGAGCTGGTCCAGAAATACATTGGAGAAGGTTCTA
GAATGGTCAGAGAACTTTTTGTGATGGCAAGGTCAGGGAGCATGCACCATCAATCATCTTCATG
GATGAAATCGATAGTATCGGGTCTGCTCGTATGGAATCTGGTAGTGGAAATGGTGACAGTGAGG
TGCAAAGGACTATGCTTGAGCTTCTCAATCAACTTGACGGATTCGAGGCGTCAAACAAAATCAA
GGTAAGGTTTTGATGGCTACAAATCGTATTGATATTCTGGATCAAGCTCTTCTCCGGCCTGGAA
GGATTGATAGGAAAATTGAATTTCCTAATCCTAATGAAGAGAGAAGATGAATGGTGCTTCAGGT
GCTGAGCTGAAG

Genomic sequence GCTGTGTGCACGGAGGCGGGAATGTTTGCTCTGCGTGAGAGGAGAGTACACGTGACACAAGAAG
ACTTTGAGATGGCGGTGGCCAAGGTAATGAAGAAAGACACGGAGAAGAACATGTCTCTGCGTAA
GCTGTGGAAGTAGGAATCTCTCATGGAAAGACTTTCTTTACTTTACTGTTTGTTGTTTGATTCT
GAAACCTTTTTTCGGTTGTCTCATGAAAACATTTTAGAACAAAGTTTTTACTATCTAGACACGA
GTTTATCTAGTATGCGATTTGAGGTCAATGGAAGGAAATTCCCAAAACTCAAGAACCTGAGCTT
ATAAGACCAAAACAAGCAGAACCTTCACATGTTAAGAGTTCTTCTGTCCGAAACTGTCATATTC
CATTAGAGAGAAAAAGCCTATAATGTAAATGTTATGATAATTTATTTCAATTACAAATTTTACG
CACGAATTTGGTTTATTCGGTATGGTTTAGCTCGGTTACCAAAGTTTTGGTGTATGCTTAAGTT
GTGGTTTTGGACTTTTTGTATTGCAGACTTATAAAATAACAAAACCAAGCGGTTTATAAATTTT
GTTAATTTTGGGTTGGTTCCGTCATTCCATTTTTTATTTTTCTCCCAAATAAAAAATCATATGA
AATTAAACTTAAAAAGAGCAAGATCTTTAATACAAGATCTTTAATACAAGTTTAGCAAAAAAAA
GATCTTTAATACAAATGATAACATAGTTACAAAATTATACAAAACATATGATATTAATGAATTA
TATAATACACAATAAGCAATGGAAAAGAAAAATACAATAGCTTATATCTTGTTCTCTGGACATT
TTGCACCTTTCTTATGTTTCCAGTTATTACGTTTAAACTTTGTGCACAGAAACGAAAATATTTG
ATATGCGTGAGAGGAGAGTACACGTGACATAAGAATACTGAGATGGCGGTGGCGAAAGTAACGA
AAAACACACACAAAGAAGAACAAGCCTCTGAGTAAGTTCTGGAAGTAGGAATCTCTTTGTTATG
TAATTCAAGTCAATGGAAAACCACATTTTCATTTCGGATATGACAAATTAGAGTTTCTTTACTT
TGCTGTCGATTGCTGGTTTTGAAACCCTTTTTCGGTTGATTCATCAAACATTTTTAGATTAAGT
TTTTATGACCTAAATATTTTTTTTTTATATCTAAATGTGTCTTTAAAACGAACACATGTTCAAA
GTTTTTATGTCCAAATCAGTTATCATATTTGATTAGAGAGAAAAAAGCTATAAAGTTAATATTA
TTATAATTTAATTAATATGACTATTTTAGTAATAAAATCCTTCAACTAAAGATGAATCGTGAGA
AAACCTATCAATTATTTATTTAGTGAAAAAACTCTAAACTTAAAATTTGTTAATGTAAATCCTC
ATCCATCTATATTGTCGTGAAAATTGGACGGATTACAATTAAAATAAAATGTAATATTTTTCAC
AAATTGAAAAATAATAAATATACACTTAAACAATAAAAATTGTAAATAAAAACAACAAAATGTT
CTTATTTATACCGAATCTAAATTTTCTAATTTATTTAAGCTCTAAAATTTAGAAAGTGAAAAAT
GAGATTTTTATAAGGTTTGTGTGTTGTCGAAGTCGATTCATTTTAATTTGACCCTAACCCGTCT
AATTTTTATTACTAAAAATGAAGAGAGAATTGTATTAACAGAATTTAAATTAAAGGGTATTTTT
ACAATCATCTTTAGTCGAGTGGTTTTATTACTAAAAACTTTTTTTTAAAATACAAATGTTTATG
CAATAATATGGTTTATTCGGTGTGGTTTTAGTTGGGTTACCCAAAAAAGTTTTAATAATAGGCT
TTAGTTGTGGTTTTGGTATTGCAGACATTAAAAATAACAAAACCAAGCGGTTTATAGACTCGGT
TTATTTTGGGTCGTTCGTTTTCCATTTTATTCTCACAAAATAAAAAATAGTAAATTGAACTTAC
AAAAAAAAAAAAGATGTCTTGTTGGATAATCCAAGGTTCTTTTCTATATAAAGGTTCTTTGCTC
ATGATCTTAGTCCCTGTGATCTATCTTTGAATCTCAAAAGCATACTTGAGAGAGATCTGTTTCG
ATAATTTGCTTCAATCACCGTGTTAATGGCGGCCGTAGGAGTGGAGGCGAGACCTCCTGTGACA
GCGATGGAGGAAACCTGCAACGTTAAGGGAGCGGCGGCGAAACAAGGAGAAGGGCTTAACAAGT
ACTACCTCCAGCATCTCGATGAGCTCCAGCGCCTGCAACGCGAAAAGTCGTATAACCTTAATCG
TCTTGAAGCTCAGAGGAATGAACTCAATTCTCGAGGTCTCTTTTTCCTTCTCTAACTCTAATTT
TCATTGAATTTCTTTGCAAAGTTGGATCTTTTGATCATCTTCTTAAGTTTAGTAATCTCGAATT
CCATATTAGGACTTTAGATTTCGTCTGGGTGCTTTAAATTTATAAATTGTTGCGGTGATTGTTT
GGATTGAGGGTTTCTGATCTTTTCCAGAACTGGATCTAAACTATGCTGCGCCTTGATTTTTAGC
ATCACTAAGTTACCCTATTGAGATTTCTTCTTGATTCTGTTTGTGTTGAGTATGAATCAGCTTC
TGTCAATATTTGATTGTTTAGCAAAGTATGTAGTGATTGATACAATCGATGTATACTGCTGAAC
ATTTTAAACCTTGTTGTCATTGTAAACTGAACAGTACGAATGCTCAGAGAAGAGTTACAGCTCC
TTCAAGAACCTGGGTCCTATGTGGGTGAAGTGGTAAAAGTGATGGGAAAAAACAAGGTCTTGGT
TAAGGTATGAATGTTTTTATCGTATTATCTAGATTGGTTTTTGAATTGTTTGCAATCATATGAA
CATTGATAGAATAATACTTTCCCATGTTTCAGGTTCATCCAGAGGGGAAGTATGTTGTCGATAT
TGACAAAAGTATAGACATAACGAAACTCACTCCATCAACGAGAGTTGCTCTCCGTAATGATAGC
TATGTTCTCCACCTGGTTCTGCCAAGTAAAGTAGATCCCTTGGTTAACCTTATGAAAGTTGAGA
AGGTTCCAGACTCCACATATGACATGATTGGTGGTCTTGACCAGCAAATCAAGGAAATAAAGGA
GGTATGCATAGTGAAAGAAACAAACGATACTAAAAGTCACTGGTTTCATGCTTTTAAATTTTAT
ATAATATCTTTACTGGTTTATCAGGTCATTGAACTGCCAATCAAGCATCCTGAATTGTTTGAGT
CTCTTGGAATTGCGCAGCCAAAGGTACACTTGAATTTCAAAGCTTATCTATATTGTGACGCTGC
TAAGTGGATTTCGAACTGATTGCTTCTCCCTCTCTTTTAAGGGTGTGTTGTTGTACGGTCCACC
TGGAACTGGGAAGACACTATTGGCTCGGGCTGTGGCACATCACACTGACTGTACTTTCATCAGA
GTTTCTGGTTCTGAGCTGGTCCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGAGAACTTT
TTGTGATGGCAAGGTTTGTACATGCTAGTCCTTATTTAATATTTCAAGCATGGTAAAAGTGGTA
GGTTGGAAAAGATGGAACTTTTGACACGATAAATCTTTTACATGCCCGTGCTTAGTAGCTGTAG
TGGACATGTGGAGTAAAATAAATTGAGTAAATTGTTCTCTGTTCCTGCTATGAATATGGTTTCA
ACATGTATACGATCTCAAGCATAATGATCTTTACAAGTAGTCTCGATGCCTAGCATTTAGGCCA
CAGTAATAGTCTTTTGTAATGAGCAAAGTATACACCATTAATCATCTTCATTGTGCTGAAAAAT
ACTTATTCCAGCTAGCTTACCTTTCTAGTACCTCTGGCTTATGGTTTTCAGGGAGCATGCACCA
TCAATCATCTTCATGGATGAAATCGATAGTATCGGGTCTGCTCGTATGGAATCTGGTAGTGGAA
ATGGTGACAGTGAGGTGCAAAGGACTATGCTTGAGCTTCTCAATCAACTTGACGGATTCGAGGC
GTCAAACAAAATCAAGGTATGCCTTATGTTGTGAATGAAAAAATAGTCATGAAGCTGAAAAGGA
TAACTCTGTGTTACTCTGAATTTCGCAGACAAAGTTGTTAATTCTCTTAAATGACTGTTGCAGG
TTTTGATGGCTACAAATCGTATTGATATTCTGGATCAAGCTCTTCTCCGGCCTGGAAGGATTGA
TAGGAAAATTGAATTTCCTAATCCTAATGAAGAGGTAATGCTTGTGTTTCTTAGGACATGATAT
TAGAAATAACTTTAAACTTGAAGTAGCAACTTTGCTCACTCCGTTGTTTTTGGTAAACTATCAT
TTACTGCGTAAAATACTTTTCTCCATACTTATTGTACCCAAAGTGAGGCAGGACGGTTTGGCTA
ATGTATATTTCTAATATGTGTTGCAGTCACGTTTTGATATCTTGAAGATACACTCAAGGAAAAT
GAATTTGATGCGTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGGTGCTTCAGGTGCT
GAGCTGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.742207695
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017