Detail information of Os04g0566500_circ_g.8


General Information
CircRNA Name Os04g0566500_circ_g.8
ID in PlantcircBase osa_circ_024919
Alias Os_ciR9512
Organism Oryza sativa
Position chr4: 28432078-28432521  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder, find_circ
Parent gene Os04g0566500
Parent gene annotation Similar to Isoform 2 of Protein argonaute 1B. (Os04t0566500-01);
Similar to Isoform 2 of Protein argonaute 1B. (Os04t0566500-02);
Similar to Argonaute protein. (Os04t0566500-03);Similar to Argon
aute protein. (Os04t0566500-04)
Parent gene strand -
Alternative splicing Os04g0566500_circ_g.3 Os04g0566500_circ_g.4 Os04g0566500_circ_g.5 Os04g0566500_circ_g.6 Os04g0566500_circ_g.7 Os04g0566500_circ_g.9 Os04g0566500_circ_g.10 Os04g0566500_circ_g.11 Os04g0566500_circ_g.12 Os04g0566500_circ_g.13
Support reads 2/13
Tissues root/shoot, root, seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0566500-01:2
Os04t0566500-04:2
Os04t0566500-02:2
Os04t0566500-03:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTAGACGCCCGCCCAAATGGGAATATCTATACAGCGTTACTAACTCAAACATAACAGCACGATT
CACGCCACGTGAAGTAACCTCAGGAGTAATAGATACcttgtggtaggcaattcacgtaacacaa
tgtcaaggacttgaagggcttcttgaggagcatctgcttgccttccagctagaaacatagccaa
atggtgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGTGGTAGGCAATTCACGTAACACAATGTCAAGGACTTGAAGGGCTTCTTGAGGAGCATCTG
CTTGCCTTCCAGCTAGAAACATAGCCAAATGGTGAAGATCAGCACGGGCAGCAAACTTGATCAC
CACCCTAAATAGTCTCTCACGCCTTAAAATAGAAGGAATGTCAGTAACAAGTTTTTAATAGATA
TTTAACTAAAGATAAAATAGCAATAGCATACCTTTGGGTGCCTTGGCCACCACCAAGACTATCT
TCCTCATCTTGAAGAGTAATTTCAAATGTCCTAGAAGCAAATGGCAATGGTCCAGCTGTGTAAA
GACTCTTCCTTCCATCATAGGCAGGTAGACGCCCGCCCAAATGGGAATATCTATACAGCGTTAC
TAACTCAAACATAACAGCACGATTCACGCCACGTGAAGTAACCTCAGGAGTAATAGATAC
Conservation Information
Conserved circRNAs osi_circ_005666* osi_circ_014671
PMCS 0.423352815
Functional Information
Coding potential Y
Potential coding position 28432475-28432487(-)
28432140-28432507(-)
Potential amino acid sequence MFELVTLYRYSHLGGRLPAYDGRKSLYTAGPLPFASRTFEITLQDEEDSLGGGQGTQRRERLFR
VVIKFAARADLHHLAMFLAGRQADAPQEALQVLDIVLRELPTTRYLLLLRLLHVA*(-)
MLLKKPFKSLTLCYVNCLPQGIYYS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017