Detail information of Os04g0566500_circ_g.4


General Information
CircRNA Name Os04g0566500_circ_g.4
ID in PlantcircBase osa_circ_024915
Alias NA
Organism Oryza sativa
Position chr4: 28429974-28432004  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0566500
Parent gene annotation Similar to Isoform 2 of Protein argonaute 1B. (Os04t0566500-01);
Similar to Isoform 2 of Protein argonaute 1B. (Os04t0566500-02);
Similar to Argonaute protein. (Os04t0566500-03);Similar to Argon
aute protein. (Os04t0566500-04)
Parent gene strand -
Alternative splicing Os04g0566500_circ_g.3 Os04g0566500_circ_g.5 Os04g0566500_circ_g.6 Os04g0566500_circ_g.7 Os04g0566500_circ_g.8 Os04g0566500_circ_g.9 Os04g0566500_circ_g.10 Os04g0566500_circ_g.11 Os04g0566500_circ_g.12 Os04g0566500_circ_g.13
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0566500-01:6
Os04t0566500-04:6
Os04t0566500-03:6
Os04t0566500-02:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATGCTTTGGTAAAAACCACGCCAACTTTCCAAACCCTCACCAAGTTGCTGGCGTCTCCCTAAA
TTGGGAGAATAAAATGACCGACCAACTGGTGAGTACccttgggggaggcagaacacgagcttca
acagatgcaagacgctcatcaatttttatgccaaattcctgcgcatactgatcttcatggtatg
cattgtga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 715
Transcript exons: 28429974-28430081,28430942-28431058,28431188-28431326,28
431432-28431538,28431634-28431743,28431871-28432004
CCTTGGGGGAGGCAGAACACGAGCTTCAACAGATGCAAGACGCTCATCAATTTTTATGCCAAAT
TCCTGCGCATACTGATCTTCATGGTATGCATTGTGAGATACAGTCCGCAAAATATCCAGTTCAC
GCTCTTGAGGTCGCTGGCAAGTCACTTTCAATAGCGCAGTAATCTGTTTCTCGTTAAGCCGCTT
CGAGTAACGCTGTCCCTCAACGATCTTACAAACCTCCATAGGCAGATAATTGGGCCTTTGCTGA
TTGCCCACTTGAAGGCAAGGCAAAGTGGTGTGCTGAATACTAAAACCATATGTCTCCAGAAAAT
ATTGCACCACAGTCTTCACAGTACCACGATCATCGACAGGGAATGATAACTCCCTTGTTGCCTG
TGAAGTGAGTCCAGATATACGATATTTTCTACGCATGTTTCCTCTATGCGTCACCTCAACCTTC
ACACCTCTTAGAGCTTTCTTTATCTTCACACGATCAGAATCAGATAATGGTCTAACTGAGATGT
CTCTGTTCAGAAGCTGAGCAACAAAGTCAATCACAGGTAGAGGCTCAATAAATGCAGTTGATGA
CATATCAATATTCAGTGAGAGACCCATCTGGGTAGGCCTTATGCTTTGGTAAAAACCACGCCAA
CTTTCCAAACCCTCACCAAGTTGCTGGCGTCTCCCTAAATTGGGAGAATAAAATGACCGACCAA
CTGGTGAGTAC

Genomic sequence CCTTGGGGGAGGCAGAACACGAGCTTCAACAGATGCAAGACGCTCATCAATTTTTATGCCAAAT
TCCTGCGCATACTGATCTTCATGGTATGCATTGTGAGATACAGTCTGATCAAAACAAGGAAAAA
CAAAGATTTAGATCCCTGAACTCAGTATCTCAGTGAAGGGTAGATAATTAAAATAAACAAAAAC
TGCTCCATCGGAAGTTTGCCATATTCTCTTATACATTCATGACAGATTCCACTACACTCACAAA
TAGCTGGAACAAAAGAGGTGGCAAAATGCATGAGAATCAACCCCTCAATATAGCTGTTTTAATC
TTGGAGAAAATAAATACAACCAAAAGCAATACCATATTTATGTTTTTTCATAGTACATAACCAT
AACATATAACACTATTCTGGTAGATCGACAAAATATACAAAAAAGGACGACTTTGTGTTGTAAC
ATCAGAAGTCTAGCAACAGCCAAAATATTTTTTTTTAAAAAAAAAAGAAGAAAGAAAGAAAGAA
ACCAACATAATTAAGCGTCTTAGAGATCGCCTACAACCAAGGATTTTCCTCTTCAAACACACAA
AGTAAATGTGAAAGTACAGAGAGCAGAAATCAAAAGGCTAAAGATCATCCTAGAAGTTTTAACT
ACAGCAGCATGCTAATGGACATGAAACATACAACTCATGGATTCATCAGATTATCAGCCCCATC
GTTTCGCTTATGCTTATGCTTATAAACCAAAATTTGAATTTTAAAGCTTAATTTTGGAGTTGAT
TTTGTGGCTTTCTCATCGAAGTTTATTTTACAACATTTGCGTTTGAATTGCTAAGAACACATAT
ATACAAGTTTTACCCATAAATTATTTTTTAGTTAGTAGTAAGTGGTTCAGATAAGTGCATTTAT
AAGTGAAAAGATGGGGCCGATAATACAGCACTATCAAAACAAATGTCATCACAAAATATGATCA
ACAGTTACCCGCAAAATATCCAGTTCACGCTCTTGAGGTCGCTGGCAAGTCACTTTCAATAGCG
CAGTAATCTGTTTCTCGTTAAGCCGCTTCGAGTAACGCTGTCCCTCAACGATCTTACAAACCTG
AACTCAATTCCAAAGGCAAGGTAAATACTTGATAACATGCTGAAGCTGGATTTAGCATTTGGAA
AATATTTTCGTACAAAAACAGCATGATACATCACTATAATTGAGCACAGCAAACATACTGACCT
CCATAGGCAGATAATTGGGCCTTTGCTGATTGCCCACTTGAAGGCAAGGCAAAGTGGTGTGCTG
AATACTAAAACCATATGTCTCCAGAAAATATTGCACCACAGTCTTCACAGTACCACGATCATCG
ACAGGGAATCTATCACAGGAGAACGGACCAAATCATATCAGTGCACAATCCTTTCAAATACCCA
TCTGCAGGAGTGCAATAGATTCTCATATAAGCTAGGGAAGAAGTGCATACGATAACTCCCTTGT
TGCCTGTGAAGTGAGTCCAGATATACGATATTTTCTACGCATGTTTCCTCTATGCGTCACCTCA
ACCTTCACACCTCTTAGAGCTTTCTTTATCTGTGAGAAAAAGGACAATGACGGTTAAAAAAAAC
ATTTTCTTAAGCACATACGGAGGTATTGTCAACAAAGGTGGTGAGGTAATATAACCAAACCTTC
ACACGATCAGAATCAGATAATGGTCTAACTGAGATGTCTCTGTTCAGAAGCTGAGCAACAAAGT
CAATCACAGGTAGAGGCTCAATAAATGCAGTTGATGACATATCTGAAACAACAAATAAGCAATT
TCAGTACGCCAGATGACACCAATGGTGAATCTGATTATACCAAAAAAATGTTTTTTGCATCTAG
ATACACAATGACAAATCAGGAGAAGTGCAACAGTATCTAACCAATATTCAGTGAGAGACCCATC
TGGGTAGGCCTTATGCTTTGGTAAAAACCACGCCAACTTTCCAAACCCTCACCAAGTTGCTGGC
GTCTCCCTAAATTGGGAGAATAAAATGACCGACCAACTGGTGAGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.249784445
Functional Information
Coding potential Y
Potential coding position 28431983-28430049(+)
28431894-28431944(-)
28430022-28431944(-)
Potential amino acid sequence MTDQLVSTLGGGRTRASTDARRSSIFMPNSCAY*(+)
MGLSLNIDMSSTAFIEPLPVIDFVAQLLNRDISVRPLSDSDRVKIKKALRGVKVEVTHRGNMRR
KYRISGLTSQATRELSFPVDDRGTVKTVVQYFLETYGFSIQHTTLPCLQVGNQQRPNYLPMEVC
KIVEGQRYSKRLNEKQITALLKVTCQRPQERELDILRTVSHNAYHEDQYAQEFGIKIDERLASV
EARVLPPPRVLTSWSVILFSQFRETPATW*(-)
MSVLHLLKLVFCLPQGYSPVGRSFYSPNLGRRQQLGEGLESWRGFYQSIRPTQMGLSLNIDMSS
TAFIEPLPVIDFVAQLLNRDISVRPLSDSDRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQA
TRELSFPVDDRGTVKTVVQYFLETYGFSIQHTTLPCLQVGNQQRPNYLPMEVCKIVEGQRYSKR
LNEKQITALLKVTCQRPQERELDILRTVSHNAYHEDQYAQEFGIKIDERLASVEARVLPPPRVL
TSWSVILFSQFRETPATW*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017