Detail information of Os04g0566500_circ_g.10


General Information
CircRNA Name Os04g0566500_circ_g.10
ID in PlantcircBase osa_circ_024921
Alias Os_ciR1069
Organism Oryza sativa
Position chr4: 28432301-28432521  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder, circseq_cup, find_circ
Parent gene Os04g0566500
Parent gene annotation Similar to Isoform 2 of Protein argonaute 1B. (Os04t0566500-01);
Similar to Isoform 2 of Protein argonaute 1B. (Os04t0566500-02);
Similar to Argonaute protein. (Os04t0566500-03);Similar to Argon
aute protein. (Os04t0566500-04)
Parent gene strand -
Alternative splicing Os04g0566500_circ_g.3 Os04g0566500_circ_g.4 Os04g0566500_circ_g.5 Os04g0566500_circ_g.6 Os04g0566500_circ_g.7 Os04g0566500_circ_g.8 Os04g0566500_circ_g.9 Os04g0566500_circ_g.11 Os04g0566500_circ_g.12 Os04g0566500_circ_g.13
Support reads 21/7/7
Tissues root/root/shoot, root, seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0566500-01:1
Os04t0566500-03:1
Os04t0566500-02:1
Os04t0566500-04:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTAGACGCCCGCCCAAATGGGAATATCTATACAGCGTTACTAACTCAAACATAACAGCACGATT
CACGCCACGTGAAGTAACCTCAGGAGTAATAGATACctttgggtgccttggccaccaccaagac
tatcttcctcatcttgaagagtaatttcaaatgtcctagaagcaaatggcaatggtccagctgt
gtaaagac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 189
Transcript exons: 28432301-28432432,28432465-28432521
CTTTGGGTGCCTTGGCCACCACCAAGACTATCTTCCTCATCTTGAAGAGTAATTTCAAATGTCC
TAGAAGCAAATGGCAATGGTCCAGCTGTGTAAAGACTCTTCCTTCCATCATAGGCAGGTAGACG
CCCGCTCAAACATAACAGCACGATTCACGCCACGTGAAGTAACCTCAGGAGTAATAGATAC

Transcript length: 200
Transcript exons: 28432301-28432410,28432432-28432521
CTTTGGGTGCCTTGGCCACCACCAAGACTATCTTCCTCATCTTGAAGAGTAATTTCAAATGTCC
TAGAAGCAAATGGCAATGGTCCAGCTGTGTAAAGACTCTTCCTTCCGCCCAAATGGGAATATCT
ATACAGCGTTACTAACTCAAACATAACAGCACGATTCACGCCACGTGAAGTAACCTCAGGAGTA
ATAGATAC

Transcript length: 205
Transcript exons: 28432301-28432444,28432461-28432521
CTTTGGGTGCCTTGGCCACCACCAAGACTATCTTCCTCATCTTGAAGAGTAATTTCAAATGTCC
TAGAAGCAAATGGCAATGGTCCAGCTGTGTAAAGACTCTTCCTTCCATCATAGGCAGGTAGACG
CCCGCCCAAATGGGAACTAACTCAAACATAACAGCACGATTCACGCCACGTGAAGTAACCTCAG
GAGTAATAGATAC

Transcript length: 217
Transcript exons: 28432301-28432428,28432433-28432521
CTTTGGGTGCCTTGGCCACCACCAAGACTATCTTCCTCATCTTGAAGAGTAATTTCAAATGTCC
TAGAAGCAAATGGCAATGGTCCAGCTGTGTAAAGACTCTTCCTTCCATCATAGGCAGGTAGACG
CCCAAATGGGAATATCTATACAGCGTTACTAACTCAAACATAACAGCACGATTCACGCCACGTG
AAGTAACCTCAGGAGTAATAGATAC

Transcript length: 221
Transcript exons: 28432301-28432521
CTTTGGGTGCCTTGGCCACCACCAAGACTATCTTCCTCATCTTGAAGAGTAATTTCAAATGTCC
TAGAAGCAAATGGCAATGGTCCAGCTGTGTAAAGACTCTTCCTTCCATCATAGGCAGGTAGACG
CCCGCCCAAATGGGAATATCTATACAGCGTTACTAACTCAAACATAACAGCACGATTCACGCCA
CGTGAAGTAACCTCAGGAGTAATAGATAC

Genomic sequence CTTTGGGTGCCTTGGCCACCACCAAGACTATCTTCCTCATCTTGAAGAGTAATTTCAAATGTCC
TAGAAGCAAATGGCAATGGTCCAGCTGTGTAAAGACTCTTCCTTCCATCATAGGCAGGTAGACG
CCCGCCCAAATGGGAATATCTATACAGCGTTACTAACTCAAACATAACAGCACGATTCACGCCA
CGTGAAGTAACCTCAGGAGTAATAGATAC
Conservation Information
Conserved circRNAs osi_circ_014673
PMCS 0.530360294
Functional Information
Coding potential Y
Potential coding position 28432475-28432487(-)
28432417-28432507(-)
Potential amino acid sequence MFELVTLYRYSHLGGRLPAYDGRKSLYTAGPLPFASRTFEITLQDEEDSLGGGQGTQRYLLLLR
LLHVA*(-)
MMEGRVFTQLDHCHLLLGHLKLLFKMRKIVLVVAKAPKGIYYS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to Pi-starvation