Detail information of BGIOSGA014534_circ_g.2


General Information
CircRNA Name BGIOSGA014534_circ_g.2
ID in PlantcircBase osi_circ_005666
Alias 4:27266588|27267031
Organism Oryza sativa ssp. indica
Position chr4: 27266588-27267031  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA014534
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014534_circ_g.5 BGIOSGA014534_circ_igg.1 BGIOSGA014534_circ_g.3 BGIOSGA014534_circ_igg.4 BGIOSGA014534_circ_g.5 BGIOSGA014534_circ_g.6 BGIOSGA014534_circ_g.7
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA014534-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTAGACGCCCGCCCAAATGGGAATATCTATACAGCGTTACTAACTCAAACATAACAGCACGATT
CACGCCACGTGAAGTAACCTCAGGAGTAATAGATACcttgtggtaggcaattcacgtaacacaa
tgtcaaggacttgaagggcttcttgaggagcatctgcttgccttccagctagaaacatagccaa
atggtgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGTGGTAGGCAATTCACGTAACACAATGTCAAGGACTTGAAGGGCTTCTTGAGGAGCATCTG
CTTGCCTTCCAGCTAGAAACATAGCCAAATGGTGAAGATCAGCACGGGCAGCAAACTTGATCAC
CACCCTAAATAGTCTCTCACGCCTTAAAATAGAAGGAATGTCAGTAACAAGTTTTTAATAGATA
TTTAACTAAAGATAAAATAGCAATAGCATACCTTTGGGTGCCTTGGCCACCACCAAGACTATCT
TCCTCATCTTGAAGAGTAATTTCAAATGTCCTAGAAGCAAAAGGCAATGGTCCAGCTGTGTAAA
GACTCTTCCTTCCATCATAGGCAGGTAGACGCCCGCCCAAATGGGAATATCTATACAGCGTTAC
TAACTCAAACATAACAGCACGATTCACGCCACGTGAAGTAACCTCAGGAGTAATAGATAC
Conservation Information
Conserved circRNAs osa_circ_024919*
PMCS
Functional Information
Coding potential Y
Potential coding position 27266985-27266997(-)
27266650-27267017(-)
Potential amino acid sequence MFELVTLYRYSHLGGRLPAYDGRKSLYTAGPLPFASRTFEITLQDEEDSLGGGQGTQRRERLFR
VVIKFAARADLHHLAMFLAGRQADAPQEALQVLDIVLRELPTTRYLLLLRLLHVA*(-)
MLLKKPFKSLTLCYVNCLPQGIYYS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021