Detail information of Os04g0566500_circ_g.3


General Information
CircRNA Name Os04g0566500_circ_g.3
ID in PlantcircBase osa_circ_024914
Alias NA
Organism Oryza sativa
Position chr4: 28429974-28431326  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0566500
Parent gene annotation Similar to Isoform 2 of Protein argonaute 1B. (Os04t0566500-01);
Similar to Isoform 2 of Protein argonaute 1B. (Os04t0566500-02);
Similar to Argonaute protein. (Os04t0566500-03);Similar to Argon
aute protein. (Os04t0566500-04)
Parent gene strand -
Alternative splicing Os04g0566500_circ_g.4 Os04g0566500_circ_g.5 Os04g0566500_circ_g.6 Os04g0566500_circ_g.7 Os04g0566500_circ_g.8 Os04g0566500_circ_g.9 Os04g0566500_circ_g.10 Os04g0566500_circ_g.11 Os04g0566500_circ_g.12 Os04g0566500_circ_g.13
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0566500-01:3
Os04t0566500-03:3
Os04t0566500-02:3
Os04t0566500-04:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGAAGGCAAGGCAAAGTGGTGTGCTGAATACTAAAACCATATGTCTCCAGAAAATATTGCACC
ACAGTCTTCACAGTACCACGATCATCGACAGGGAATccttgggggaggcagaacacgagcttca
acagatgcaagacgctcatcaatttttatgccaaattcctgcgcatactgatcttcatggtatg
cattgtga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGGGGGAGGCAGAACACGAGCTTCAACAGATGCAAGACGCTCATCAATTTTTATGCCAAAT
TCCTGCGCATACTGATCTTCATGGTATGCATTGTGAGATACAGTCTGATCAAAACAAGGAAAAA
CAAAGATTTAGATCCCTGAACTCAGTATCTCAGTGAAGGGTAGATAATTAAAATAAACAAAAAC
TGCTCCATCGGAAGTTTGCCATATTCTCTTATACATTCATGACAGATTCCACTACACTCACAAA
TAGCTGGAACAAAAGAGGTGGCAAAATGCATGAGAATCAACCCCTCAATATAGCTGTTTTAATC
TTGGAGAAAATAAATACAACCAAAAGCAATACCATATTTATGTTTTTTCATAGTACATAACCAT
AACATATAACACTATTCTGGTAGATCGACAAAATATACAAAAAAGGACGACTTTGTGTTGTAAC
ATCAGAAGTCTAGCAACAGCCAAAATATTTTTTTTTAAAAAAAAAAGAAGAAAGAAAGAAAGAA
ACCAACATAATTAAGCGTCTTAGAGATCGCCTACAACCAAGGATTTTCCTCTTCAAACACACAA
AGTAAATGTGAAAGTACAGAGAGCAGAAATCAAAAGGCTAAAGATCATCCTAGAAGTTTTAACT
ACAGCAGCATGCTAATGGACATGAAACATACAACTCATGGATTCATCAGATTATCAGCCCCATC
GTTTCGCTTATGCTTATGCTTATAAACCAAAATTTGAATTTTAAAGCTTAATTTTGGAGTTGAT
TTTGTGGCTTTCTCATCGAAGTTTATTTTACAACATTTGCGTTTGAATTGCTAAGAACACATAT
ATACAAGTTTTACCCATAAATTATTTTTTAGTTAGTAGTAAGTGGTTCAGATAAGTGCATTTAT
AAGTGAAAAGATGGGGCCGATAATACAGCACTATCAAAACAAATGTCATCACAAAATATGATCA
ACAGTTACCCGCAAAATATCCAGTTCACGCTCTTGAGGTCGCTGGCAAGTCACTTTCAATAGCG
CAGTAATCTGTTTCTCGTTAAGCCGCTTCGAGTAACGCTGTCCCTCAACGATCTTACAAACCTG
AACTCAATTCCAAAGGCAAGGTAAATACTTGATAACATGCTGAAGCTGGATTTAGCATTTGGAA
AATATTTTCGTACAAAAACAGCATGATACATCACTATAATTGAGCACAGCAAACATACTGACCT
CCATAGGCAGATAATTGGGCCTTTGCTGATTGCCCACTTGAAGGCAAGGCAAAGTGGTGTGCTG
AATACTAAAACCATATGTCTCCAGAAAATATTGCACCACAGTCTTCACAGTACCACGATCATCG
ACAGGGAAT
Conservation Information
Conserved circRNAs zma_circ_000996
PMCS 0.136702993
Functional Information
Coding potential Y
Potential coding position 28431269-28430049(+)
28431195-28431314(-)
28430022-28431314(-)
Potential amino acid sequence MSPENIAPQSSQYHDHRQGILGGGRTRASTDARRSSIFMPNSCAY*(+)
MEVCKIVEGQRYSKRLNEKQITALLKVTCQRPQERELDILRTVSHNAYHEDQYAQEFGIKIDER
LASVEARVLPPPRIPCR*(-)
MSVLHLLKLVFCLPQGFPVDDRGTVKTVVQYFLETYGFSIQHTTLPCLQVGNQQRPNYLPMEVC
KIVEGQRYSKRLNEKQITALLKVTCQRPQERELDILRTVSHNAYHEDQYAQEFGIKIDERLASV
EARVLPPPRIPCR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017