Detail information of Os04g0566500_circ_g.6


General Information
CircRNA Name Os04g0566500_circ_g.6
ID in PlantcircBase osa_circ_024917
Alias Os04circ11594
Organism Oryza sativa
Position chr4: 28431871-28432209  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os04g0566500
Parent gene annotation Similar to Isoform 2 of Protein argonaute 1B. (Os04t0566500-01);
Similar to Isoform 2 of Protein argonaute 1B. (Os04t0566500-02);
Similar to Argonaute protein. (Os04t0566500-03);Similar to Argon
aute protein. (Os04t0566500-04)
Parent gene strand -
Alternative splicing Os04g0566500_circ_g.3 Os04g0566500_circ_g.4 Os04g0566500_circ_g.5 Os04g0566500_circ_g.7 Os04g0566500_circ_g.8 Os04g0566500_circ_g.9 Os04g0566500_circ_g.10 Os04g0566500_circ_g.11 Os04g0566500_circ_g.12 Os04g0566500_circ_g.13
Support reads 2
Tissues leaf and panicle
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os04t0566500-01:2
Os04t0566500-03:2
Os04t0566500-02:2
Os04t0566500-04:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGGACTTGAAGGGCTTCTTGAGGAGCATCTGCTTGCCTTCCAGCTAGAAACATAGCCAAATGG
TGAAGATCAGCACGGGCAGCAAACTTGATCACCACCcaatattcagtgagagacccatctgggt
aggccttatgctttggtaaaaaccacgccaactttccaaaccctcaccaagttgctggcgtctc
cctaaatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAATATTCAGTGAGAGACCCATCTGGGTAGGCCTTATGCTTTGGTAAAAACCACGCCAACTTTC
CAAACCCTCACCAAGTTGCTGGCGTCTCCCTAAATTGGGAGAATAAAATGACCGACCAACTGGT
GAGTACCTAAAAAAAAAAGGAAATAAAGCCATTGTCACAAGAAAATCAATAAACAATAGATGGC
TAGATCAGATATTACCTTGTGGTAGGCAATTCACGTAACACAATGTCAAGGACTTGAAGGGCTT
CTTGAGGAGCATCTGCTTGCCTTCCAGCTAGAAACATAGCCAAATGGTGAAGATCAGCACGGGC
AGCAAACTTGATCACCACC
Conservation Information
Conserved circRNAs NA
PMCS 0.368039651
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015