Detail information of Os04g0566500_circ_g.7


General Information
CircRNA Name Os04g0566500_circ_g.7
ID in PlantcircBase osa_circ_024918
Alias Os_ciR9511
Organism Oryza sativa
Position chr4: 28432078-28432227  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os04g0566500
Parent gene annotation Similar to Isoform 2 of Protein argonaute 1B. (Os04t0566500-01);
Similar to Isoform 2 of Protein argonaute 1B. (Os04t0566500-02);
Similar to Argonaute protein. (Os04t0566500-03);Similar to Argon
aute protein. (Os04t0566500-04)
Parent gene strand -
Alternative splicing Os04g0566500_circ_g.3 Os04g0566500_circ_g.4 Os04g0566500_circ_g.5 Os04g0566500_circ_g.6 Os04g0566500_circ_g.8 Os04g0566500_circ_g.9 Os04g0566500_circ_g.10 Os04g0566500_circ_g.11 Os04g0566500_circ_g.12 Os04g0566500_circ_g.13
Support reads 2/2
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0566500-01:1
Os04t0566500-03:1
Os04t0566500-04:1
Os04t0566500-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTAGAAACATAGCCAAATGGTGAAGATCAGCACGGGCAGCAAACTTGATCACCACCCTAAATA
GTCTCTCACGCcttgtggtaggcaattcacgtaacacaatgtcaaggacttgaagggcttcttg
aggagcatctgcttgccttcca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 150
Transcript exons: 28432078-28432227
CTTGTGGTAGGCAATTCACGTAACACAATGTCAAGGACTTGAAGGGCTTCTTGAGGAGCATCTG
CTTGCCTTCCAGCTAGAAACATAGCCAAATGGTGAAGATCAGCACGGGCAGCAAACTTGATCAC
CACCCTAAATAGTCTCTCACGC

Genomic sequence CTTGTGGTAGGCAATTCACGTAACACAATGTCAAGGACTTGAAGGGCTTCTTGAGGAGCATCTG
CTTGCCTTCCAGCTAGAAACATAGCCAAATGGTGAAGATCAGCACGGGCAGCAAACTTGATCAC
CACCCTAAATAGTCTCTCACGC
Conservation Information
Conserved circRNAs NA
PMCS 0.470188278
Functional Information
Coding potential Y
Potential coding position 28432165-28432080(-)
28432140-28432204(-)
Potential amino acid sequence MFLAGRQADAPQEALQVLDIVLRELPTTRRERLFRVVIKFAARADLHHLAMFLAGRQADAPQEA
LQVLDIVLRELPTTRRERLFRVVIKFAARADLHHLAMFLAGRQADAPQEALQVLDIVLRELPTT
RRERLFRVVIKFAARADLHHLAMFLAGRQADAPQEALQVLDIVLRELPTT(-)
MLLKKPFKSLTLCYVNCLPQGVRDYLGW*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017