Detail information of Os04g0566500_circ_g.9


General Information
CircRNA Name Os04g0566500_circ_g.9
ID in PlantcircBase osa_circ_024920
Alias NA
Organism Oryza sativa
Position chr4: 28432078-28433385  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os04g0566500
Parent gene annotation Similar to Isoform 2 of Protein argonaute 1B. (Os04t0566500-01);
Similar to Isoform 2 of Protein argonaute 1B. (Os04t0566500-02);
Similar to Argonaute protein. (Os04t0566500-03);Similar to Argon
aute protein. (Os04t0566500-04)
Parent gene strand -
Alternative splicing Os04g0566500_circ_g.3 Os04g0566500_circ_g.4 Os04g0566500_circ_g.5 Os04g0566500_circ_g.6 Os04g0566500_circ_g.7 Os04g0566500_circ_g.8 Os04g0566500_circ_g.10 Os04g0566500_circ_g.11 Os04g0566500_circ_g.12 Os04g0566500_circ_g.13
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0566500-01:3
Os04t0566500-04:3
Os04t0566500-03:3
Os04t0566500-02:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTCGCTGTGAAGAACCATGGCCAGGAGCTCCTGGAGCCTCTCCAGAACTCTCACCGGTGCTGC
CAGACCCAGTTCTTTTCTTCTTCACCATGATGGGCActtgtggtaggcaattcacgtaacacaa
tgtcaaggacttgaagggcttcttgaggagcatctgcttgccttccagctagaaacatagccaa
atggtgaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1159
Transcript exons: 28432078-28432227,28432301-28432521,28432598-28433385
CTTGTGGTAGGCAATTCACGTAACACAATGTCAAGGACTTGAAGGGCTTCTTGAGGAGCATCTG
CTTGCCTTCCAGCTAGAAACATAGCCAAATGGTGAAGATCAGCACGGGCAGCAAACTTGATCAC
CACCCTAAATAGTCTCTCACGCCTTTGGGTGCCTTGGCCACCACCAAGACTATCTTCCTCATCT
TGAAGAGTAATTTCAAATGTCCTAGAAGCAAATGGCAATGGTCCAGCTGTGTAAAGACTCTTCC
TTCCATCATAGGCAGGTAGACGCCCGCCCAAATGGGAATATCTATACAGCGTTACTAACTCAAA
CATAACAGCACGATTCACGCCACGTGAAGTAACCTCAGGAGTAATAGATACGTCGTATTGGTGA
AGGTCTTTATCAGGAAGTTCAGCAAAGAAATGGTTCGCCTTCACAATGCACCTGTCCCCATATG
TACCCTTGCCAGGGCGCAACGGGAATCTAACTGATTTGCTTGACGGTGGTGCTATTTGAATGGC
TTGGCTGGTCGAACTTTGATCACGGGTGGCAAGTTGCTGAAACTGTTGTTGGACTTGTCCACTG
CTCACCTCCGCCGCAGGCTGAGAGGATGAGCCAGCTCCCGATGGGGTTGGTGAAACCATCGGGG
CTTGGTATTGGACATGTGGGGCTTGGTGCAGCTCGGGAACTGTTCTTGATGAACCTGAAGGAAC
ACTACGTCCGCCACTCCCCCTAGGTCCGCCATAGTATGGCTGTGGCATTCCACCTCTGGGGCGT
GGACCACCACGTCCTTGATAGTCACGCGGTTGATACTCGGGAGGCCCACCACCTGGGTGATGTG
AACCTGATCCTCCACGGCCCTGATAGTCAGGAGGCCCACCACCTGGATGATGTGAACCTGGCCC
TCCACGACCCTGATACTCAGGAGGCCCTCCACCTGGATGGTGTGAACCTTGCCCTCCACGGCCC
TGATAATGTCCACCACGGCCCTGGTATTGCCCACCACCACGGCCACCATGTTGAGGCACCCAAC
CACGTCCTCCCCCATGCTGTTGAGGACCTCTCTCAGCTCGCTGTGAAGAACCATGGCCAGGAGC
TCCTGGAGCCTCTCCAGAACTCTCACCGGTGCTGCCAGACCCAGTTCTTTTCTTCTTCACCATG
ATGGGCA

Genomic sequence CTTGTGGTAGGCAATTCACGTAACACAATGTCAAGGACTTGAAGGGCTTCTTGAGGAGCATCTG
CTTGCCTTCCAGCTAGAAACATAGCCAAATGGTGAAGATCAGCACGGGCAGCAAACTTGATCAC
CACCCTAAATAGTCTCTCACGCCTTAAAATAGAAGGAATGTCAGTAACAAGTTTTTAATAGATA
TTTAACTAAAGATAAAATAGCAATAGCATACCTTTGGGTGCCTTGGCCACCACCAAGACTATCT
TCCTCATCTTGAAGAGTAATTTCAAATGTCCTAGAAGCAAATGGCAATGGTCCAGCTGTGTAAA
GACTCTTCCTTCCATCATAGGCAGGTAGACGCCCGCCCAAATGGGAATATCTATACAGCGTTAC
TAACTCAAACATAACAGCACGATTCACGCCACGTGAAGTAACCTCAGGAGTAATAGATACCTGA
AGGAACAAGATAGGTGATCAAAATCACAAAATGAAAGCTACAGCAAGGAAATAGGACTTACAAA
AGCCTTACGTCGTATTGGTGAAGGTCTTTATCAGGAAGTTCAGCAAAGAAATGGTTCGCCTTCA
CAATGCACCTGTCCCCATATGTACCCTTGCCAGGGCGCAACGGGAATCTAACTGATTTGCTTGA
CGGTGGTGCTATTTGAATGGCTTGGCTGGTCGAACTTTGATCACGGGTGGCAAGTTGCTGAAAC
TGTTGTTGGACTTGTCCACTGCTCACCTCCGCCGCAGGCTGAGAGGATGAGCCAGCTCCCGATG
GGGTTGGTGAAACCATCGGGGCTTGGTATTGGACATGTGGGGCTTGGTGCAGCTCGGGAACTGT
TCTTGATGAACCTGAAGGAACACTACGTCCGCCACTCCCCCTAGGTCCGCCATAGTATGGCTGT
GGCATTCCACCTCTGGGGCGTGGACCACCACGTCCTTGATAGTCACGCGGTTGATACTCGGGAG
GCCCACCACCTGGGTGATGTGAACCTGATCCTCCACGGCCCTGATAGTCAGGAGGCCCACCACC
TGGATGATGTGAACCTGGCCCTCCACGACCCTGATACTCAGGAGGCCCTCCACCTGGATGGTGT
GAACCTTGCCCTCCACGGCCCTGATAATGTCCACCACGGCCCTGGTATTGCCCACCACCACGGC
CACCATGTTGAGGCACCCAACCACGTCCTCCCCCATGCTGTTGAGGACCTCTCTCAGCTCGCTG
TGAAGAACCATGGCCAGGAGCTCCTGGAGCCTCTCCAGAACTCTCACCGGTGCTGCCAGACCCA
GTTCTTTTCTTCTTCACCATGATGGGCA
Conservation Information
Conserved circRNAs osi_circ_014672
PMCS 0.46819042
Functional Information
Coding potential Y
Potential coding position 28433304-28432084(+)
28432140-28433339(-)
28433379-28433339(-)
Potential amino acid sequence MARSSWSLSRTLTGAARPSSFLLHHDGHLW*(+)
MLLKKPFKSLTLCYVNCLPQVPIMVKKKRTGSGSTGESSGEAPGAPGHGSSQRAERGPQQHGGG
RGWVPQHGGRGGGQYQGRGGHYQGRGGQGSHHPGGGPPEYQGRGGPGSHHPGGGPPDYQGRGGS
GSHHPGGGPPEYQPRDYQGRGGPRPRGGMPQPYYGGPRGSGGRSVPSGSSRTVPELHQAPHVQY
QAPMVSPTPSGAGSSSQPAAEVSSGQVQQQFQQLATRDQSSTSQAIQIAPPSSKSVRFPLRPGK
GTYGDRCIVKANHFFAELPDKDLHQYDVSITPEVTSRGVNRAVMFELVTLYRYSHLGGRLPAYD
GRKSLYTAGPLPFASRTFEITLQDEEDSLGGGQGTQRRERLFRVVIKFAARADLHHLAMFLAGR
QADAPQEALQVLDIVLRELPTTSAHHGEEEKNWVWQHR*(-)
MVKKKRTGSGSTGESSGEAPGAPGHGSSQRAERGPQQHGGGRGWVPQHGGRGGGQYQGRGGHYQ
GRGGQGSHHPGGGPPEYQGRGGPGSHHPGGGPPDYQGRGGSGSHHPGGGPPEYQPRDYQGRGGP
RPRGGMPQPYYGGPRGSGGRSVPSGSSRTVPELHQAPHVQYQAPMVSPTPSGAGSSSQPAAEVS
SGQVQQQFQQLATRDQSSTSQAIQIAPPSSKSVRFPLRPGKGTYGDRCIVKANHFFAELPDKDL
HQYDVSITPEVTSRGVNRAVMFELVTLYRYSHLGGRLPAYDGRKSLYTAGPLPFASRTFEITLQ
DEEDSLGGGQGTQRRERLFRVVIKFAARADLHHLAMFLAGRQADAPQEALQVLDIVLRELPTTS
AHHGEEEKNWVWQHR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017