Detail information of Os11g0525600_circ_g.16


General Information
CircRNA Name Os11g0525600_circ_g.16
ID in PlantcircBase osa_circ_009471
Alias Os_ciR5187
Organism Oryza sativa
Position chr11: 19065749-19067422  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method find_circ
Parent gene Os11g0525600
Parent gene annotation Similar to Alpha-mannosidase. (Os11t0525600-01);Similar to Alpha
-mannosidase. (Os11t0525600-02);Similar to predicted protein. (O
s11t0525600-03);Similar to predicted protein. (Os11t0525600-04);
Similar to predicted protein. (Os11t0525600-05)
Parent gene strand +
Alternative splicing Os11g0525600_circ_g.2 Os11g0525600_circ_g.3 Os11g0525600_circ_g.4 Os11g0525600_circ_g.5 Os11g0525600_circ_g.6 Os11g0525600_circ_g.7 Os11g0525600_circ_g.8 Os11g0525600_circ_g.9 Os11g0525600_circ_g.10 Os11g0525600_circ_g.11 Os11g0525600_circ_g.12 Os11g0525600_circ_g.13 Os11g0525600_circ_g.14 Os11g0525600_circ_g.15
Support reads 3
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os11t0525600-02:6
Os11t0525600-05:6
Os11t0525600-03:6
Os11t0525600-01:6
Os11t0525600-04:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATACGCACATTCCTCATCAATTTCGCCCCGCAGTCCGGCAAACAGTTGATGTGAGGGGTGACAT
GGCCTTGGCACCAATGTTTTATTTTTAGCTTGAGTTtacttcatgatgatggtcgtggtgttgc
agaggcattaaatgaaacaacctgttttgataatcaatgtgaaggactagttgtaagtaaacag
agcttatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TACTTCATGATGATGGTCGTGGTGTTGCAGAGGCATTAAATGAAACAACCTGTTTTGATAATCA
ATGTGAAGGACTAGTTGTAAGTAAACAGAGCTTATTCTTGAATCCCTGTTCTGGATATAAGTCA
AAATAAGATGTCAGCTACTGAGATCCTATCAGCAAAAGAATATGGGATCCCTTGTTTTTGAAGA
AAATTTAGAGCATACTTAAATAAAATAAGTTAGTGCTATAAAGTAATATATCGTTTCTGCCCTC
TTGAAATATTTTCTTATCTATAACAAAGTCCTCTTGGAGTATAAAGAGAAGATATATATGTTGT
GCCAACTGTCACTAGAGATGTTTTTGTTCTATAATGTTTTCAAATACATTGATTGTGTGCAAAA
ATACTGTGGAAAACATCTTATTATGGTATTTCACAGATTCAAGGAAAGTATTATCTCAAAATTG
ATCCACAAGGTGAAGGAGCTAGGTGGCGGCGGACATTTGGCCAGGAAATATACTCCCCTCTTCT
TATTGCTTTTGCAGAGCAGGTATAAACTGGAACTTATTTATAAAATAGTTGACCAAAAGGTTAT
GCTAGTTCTGAGCATGTCCTTGCTGTTTACTCAGGATGGAGGTAATTGGGTGAATTCACACGTT
ACAAAATTCTCTGCAATGGATCCGGCCTACAGCTTGCCTGATAATGTTGCATTGCTTACTCTTC
AGGTATCTGCGTGCTATGGACCACTGTTGTTTCTCTTAAAAGTAAAAATGAAATGCTTGTCTTT
GCACTAACAACTACATTGAAAGCCCTGATGGATTACTTGATTCTAGAGGTGGGAACCAGAATTA
TTCCCATCTTTGGTTATCGACTACCCAACTATCGCTGATTTGGTTCACCTTTATGCAGTATAAT
ATTTATATTATTTTTAACCATTTGCAATGGTGCAAGCTAGTTCTTTGTCCTGCCCCAATCCTGC
TTGATATCATTGATTACAAACAGTAATGAGCCAGTTAGCTAAAAATGTGCTCATGTACAAAATT
GATGAAAATGCTTTCTAAATCTGTATCGGGCAAGTGTTGCACGATGTCGCTTTAAAAGTTATAT
GTGTCAAATGCCCCTGCGTTGGACAGGAACTTGAAGACGGAACTGTTCTTCTTCGGTTGGCTCA
CCTATACGAGGTCTTGTGCTATCATCCTTACTTTTCCTTGGTATACCTTGATCTTCCTTTTTAT
TTATTTTCTGAGTCTTGCCCTGTGTAATTATAGGCTGGAGAGCACAAGGATCTTTCAGCTCTAG
CTAGCGTCGACCTGAAGAGAGTATTTCCAGACAAGAAGGTGATCATCATCACATTTTCTGATAT
ACATCTATGTTTGATATACATGACCATTATCAACTTATTCGATCATTCCATCCTCACCTCTCCA
GATTGTCAAGATTGTTGAGACAAGCCTATCAGCGAACCAAGAACGTTCAGCCATGGAGAAAAAG
AGGCTGAAGTGGAAGGTGGAAGGCCCTCCTGCTGATGAAAAGATCGTCCGGGGAGGCCCCGTAG
ATCCTTCCAAGCTCGTCGTTGATCTGGGCCCCATGGAGATACGCACATTCCTCATCAATTTCGC
CCCGCAGTCCGGCAAACAGTTGATGTGAGGGGTGACATGGCCTTGGCACCAATGTTTTATTTTT
AGCTTGAGTT
Conservation Information
Conserved circRNAs NA
PMCS 0.119810922
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015