Detail information of Os10g0488800_circ_g.4


General Information
CircRNA Name Os10g0488800_circ_g.4
ID in PlantcircBase osa_circ_007217
Alias Os_ciR1631
Organism Oryza sativa
Position chr10: 18535295-18536210  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, circRNA_finder, find_circ
Parent gene Os10g0488800
Parent gene annotation Myosin head, motor region domain containing protein. (Os10t04888
00-01);Similar to Myosin head family protein, expressed. (Os10t0
488800-02)
Parent gene strand +
Alternative splicing Os10g0488800_circ_igg.1 Os10g0488800_circ_igg.2 Os10g0488800_circ_g.1 Os10g0488800_circ_g.2 Os10g0488800_circ_g.3 Os10g0488800_circ_g.5 Os10g0488800_circ_g.6 Os10g0488800_circ_g.7 Os10g0488800_circ_g.8
Support reads 7/12
Tissues root/shoot, root, seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0488800-01:4
Os10t0488800-02:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTCTCTGATGTCTTCGAACAGGAATACGTTGAAGATGGCATTGACTGGGCAAAGGTTGAGTTT
GAGGACAATCAGAACTGTTTGAATCTCTTTGAGAAAcggcagaaacggtcgcaagacttcttgg
ctgcagtattgaagatctcaatttagctttgtcgaagaggcacatgaaagttaataatgaaaat
attgtaca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 440
Transcript exons: 18535295-18535413,18535514-18535666,18535746-18535835,18
536133-18536210
CGGCAGAAACGGTCGCAAGACTTCTTGGCTGCAGTATTGAAGATCTCAATTTAGCTTTGTCGAA
GAGGCACATGAAAGTTAATAATGAAAATATTGTACAGAAACTCACCCTTTCACAGGCAATCGAC
ACAAGAGATGCGTTGGCCAAGTCACTCTATGCCAGTTTGTTTGAGTGGCTTGTTGAACAAATTA
ACAAGTCTCTTTCAGTTGGCAAGCGTCGAACTGGGAGATCAATCAGCATTCTTGATATCTATGG
CTTTGAATCATTCGATAGGAACAGTTTTGAACAGTTCTGTATTAACTATGCTAATGAAAGGCTC
CAACAACATTTCAATCGCCATTTGTTTAAGCTTGAACAAGAGGAATACGTTGAAGATGGCATTG
ACTGGGCAAAGGTTGAGTTTGAGGACAATCAGAACTGTTTGAATCTCTTTGAGAAA

Genomic sequence CGGCAGAAACGGTCGCAAGACTTCTTGGCTGCAGTATTGAAGATCTCAATTTAGCTTTGTCGAA
GAGGCACATGAAAGTTAATAATGAAAATATTGTACAGAAACTCACCCTTTCACAGGTTAGTGAG
TTTTGTTCTTAACTAAATGCAAGGTAGCAACAACAGCCATGAAAGTATTGTTAAATTCACAGTT
CTGCACCCACCTCTTTGAATATTGCAGGCAATCGACACAAGAGATGCGTTGGCCAAGTCACTCT
ATGCCAGTTTGTTTGAGTGGCTTGTTGAACAAATTAACAAGTCTCTTTCAGTTGGCAAGCGTCG
AACTGGGAGATCAATCAGCATTCTTGATATCTATGGCTTTGAATCATTCGATGTAATGTACTTC
CATTTGACATGCTGTCATCATATTTTAATTGGCAAATGGTTTCTCATGTCATAACACAAAATTG
CAGAGGAACAGTTTTGAACAGTTCTGTATTAACTATGCTAATGAAAGGCTCCAACAACATTTCA
ATCGCCATTTGTTTAAGCTTGAACAAGAGGTGAGCTATTGCTATGGTTAAAATCCAGAATATAT
GTTTCAGGATTGCAACCTTCAACCTCTTATTTTTTTCCCATCATCGGCAGTGGCACTTTTTTAG
AGTAATGATTTTCTTGTCATGCTATGAAGTTCCAATGCATATTTTTTTTCCACAAGATCTGGTG
ATCTTCTCTTTCTCTTTGTGCACTTCTTGAACATGCTTTTCTGTGCTTTTTGTTAACTAAATGG
AAGACTTGGTAGGTGTTACTAATTCACAGCAGAGATTTTTCTCTAAATTTTCTCTGATGTCTTC
GAACAGGAATACGTTGAAGATGGCATTGACTGGGCAAAGGTTGAGTTTGAGGACAATCAGAACT
GTTTGAATCTCTTTGAGAAA
Conservation Information
Conserved circRNAs osi_circ_002869* osi_circ_008547
PMCS 0.378752802
Functional Information
Coding potential Y
Potential coding position 18535367-18535345(+)
18535369-18535821(-)
Potential amino acid sequence MKVNNENIVQKLTLSQAIDTRDALAKSLYASLFEWLVEQINKSLSVGKRRTGRSISILDIYGFE
SFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYVEDGIDWAKVEFEDNQNCLNLFEKRQKRS
QDFLAAVLKISI*(+)
MCLFDKAKLRSSILQPRSLATVSAVSQRDSNSSDCPQTQPLPSQCHLQRIPLVQA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017