Detail information of Os04g0340300_circ_igg.1


General Information
CircRNA Name Os04g0340300_circ_igg.1
ID in PlantcircBase osa_circ_023449
Alias Os_ciR576
Organism Oryza sativa
Position chr4: 16059036-16151932  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os04g0340550_circ_g.1 Os04g0340300_circ_g.1 Os04g0340300_circ_g.2 Os04g0340300_circ_igg.3 Os04g0340300_circ_g.4 Os04g0340300_circ_g.5 Os04g0340300_circ_igg.6 Os04g0340300_circ_igg.7 Os04g0340300_circ_ag.1 Os04g0340300_circ_igg.2 Os04g0340300_circ_igg.3 Os04g0340800_circ_g.1 Os04g0341500_circ_igg.1
Support reads 104/6
Tissues root/shoot
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGATTCGATCTTGTCTAAGGCAACTTCGCTTGTAACCTTGTTCTCATTCATATAGCACTCTAC
AGTGTTTGCGGCATCTCCTTTGTTCTTTCTTCCAGActtgaatgcagcaatgtcgttcatgaaa
cgcataatctttgcacaagctataacggcacttgaacgtactgttgtcaattcaaatgattcct
tcgttact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.490417158
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR5075 osa-miR2864.2 osa-miR168a-5p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017