Detail information of Os11g0525600_circ_g.10


General Information
CircRNA Name Os11g0525600_circ_g.10
ID in PlantcircBase osa_circ_009465
Alias NA
Organism Oryza sativa
Position chr11: 19063496-19063921  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0525600
Parent gene annotation Similar to Alpha-mannosidase. (Os11t0525600-01);Similar to Alpha
-mannosidase. (Os11t0525600-02);Similar to predicted protein. (O
s11t0525600-03);Similar to predicted protein. (Os11t0525600-04);
Similar to predicted protein. (Os11t0525600-05)
Parent gene strand +
Alternative splicing Os11g0525600_circ_g.2 Os11g0525600_circ_g.3 Os11g0525600_circ_g.4 Os11g0525600_circ_g.5 Os11g0525600_circ_g.6 Os11g0525600_circ_g.7 Os11g0525600_circ_g.8 Os11g0525600_circ_g.9 Os11g0525600_circ_g.11 Os11g0525600_circ_g.12 Os11g0525600_circ_g.13 Os11g0525600_circ_g.14 Os11g0525600_circ_g.15 Os11g0525600_circ_g.16
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0525600-01:3
Os11t0525600-03:3
Os11t0525600-02:3
Os11t0525600-05:3
Os11t0525600-04:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACTTGAAGTTATGTTGCCCACTTCAAGGTTCCTCTGACAGTTCTCCGTGGGTCCATATTGGAC
GAAGTGCATCAGCAGATTAATCCATGGATATATCAGgttgaagcaaattttgagcagaagtaca
agtattacataggacaggatggaaatggaagtgatcctcaggtgcagtacaaattatataatta
atttattc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGAAGCAAATTTTGAGCAGAAGTACAAGTATTACATAGGACAGGATGGAAATGGAAGTGATC
CTCAGGTGCAGTACAAATTATATAATTAATTTATTCAGCAACATTTACTATTATTGGCATTTAT
TTGCTCTTTCCTGTACCCTAGGCTTCTGGAGCATACATATTTCGCCCTAATGGCACAGTTCCTA
TCAAGACTGATGGACAGGTATGAAGAAGATATCTAATTCAGTAATTTGCCTTAAGAATTTCCAT
TGTTTTTTTTCCGAGAATAACATTTACACTGCAGCATCTGTTGAGAGATTTTAAAATTGCACGT
AAGTCTTACTTGAAGTTATGTTGCCCACTTCAAGGTTCCTCTGACAGTTCTCCGTGGGTCCATA
TTGGACGAAGTGCATCAGCAGATTAATCCATGGATATATCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.217037676
Functional Information
Coding potential Y
Potential coding position 19063896-19063498(-)
19063659-19063904(-)
Potential amino acid sequence MHFVQYGPTENCQRNLSISLDRNCAIRAKYVCSRSLRITSISILSYVILVLLLKICFNLIYPWI
NLLMHFVQYGPTENCQRNLSISLDRNCAIRAKYVCSRSLRITSISILSYVILVLLLKICFNLIY
PWINLLMHFVQYGPTENCQRNLSISLDRNCAIRAKYVCSRSLRITSISILSYVILVLLLKICFN
LIYPWINLLMHFVQYGPTENCQRNLSISLDRNCAIRAKYVCSRSLRITSISILSYVILVLLLKI
CFN(-)
MLQKPEDHFHFHPVLCNTCTSAQNLLQPDISMD*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017