Detail information of AT1G04210_circ_g.5


General Information
CircRNA Name AT1G04210_circ_g.5
ID in PlantcircBase ath_circ_000594
Alias NA
Organism Arabidpsis thaliana
Position chr1: 1118223-1118881  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT1G04210
Parent gene annotation At1g04210
Parent gene strand +
Alternative splicing 1_circ_ag.6 1_circ_ag.7 AT1G04160_circ_g.8 AT1G04160_circ_g.9 AT1G04160_circ_g.10 AT1G04160_circ_g.11 AT1G04160_circ_g.12 AT1G04160_circ_g.13 AT1G04170_circ_g.1 AT1G04170_circ_g.2 AT1G04170_circ_g.3 AT1G04170_circ_g.4 AT1G04170_circ_g.5 AT1G04170_circ_g.6 AT1G04190_circ_g.1 AT1G04190_circ_g.2 AT1G04190_circ_g.3 AT1G04200_circ_g.1 AT1G04200_circ_g.2 AT1G04200_circ_g.3 AT1G04200_circ_g.4 AT1G04200_circ_g.5 AT1G04210_circ_g.1 AT1G04210_circ_g.2 AT1G04210_circ_g.3 AT1G04210_circ_g.4 AT1G04220_circ_g.1 AT1G04230_circ_g.1 AT1G04230_circ_g.2 AT1G04230_circ_g.3 AT1G04230_circ_g.4 AT1G04230_circ_g.5 AT1G04230_circ_g.6 AT1G04250_circ_g.1 AT1G04270_circ_g.1 AT1G04280_circ_g.1 AT1G04280_circ_g.2 AT1G04300_circ_g.1 AT1G04300_circ_g.2 AT1G04300_circ_g.3 AT1G04300_circ_g.4 AT1G04300_circ_g.5 AT1G04300_circ_g.6 AT1G04300_circ_g.7 AT1G04300_circ_g.8 AT1G04300_circ_g.9 AT1G04300_circ_g.10 AT1G04310_circ_g.1 AT1G04340_circ_g.1 AT1G04400_circ_g.1 AT1G04400_circ_g.2 AT1G04400_circ_g.3 AT1G04400_circ_g.4 AT1G04410_circ_g.1 AT1G04410_circ_g.2 AT1G04410_circ_g.3 AT1G04410_circ_g.4 AT1G04410_circ_g.5 AT1G04410_circ_g.6 AT1G04410_circ_g.7 AT1G04410_circ_g.8 AT1G04420_circ_g.1 AT1G04420_circ_g.2 AT1G04420_circ_g.3 AT1G04420_circ_g.4 AT1G04425_circ_g.1 AT1G04430_circ_g.1 AT1G04430_circ_g.2 AT1G04430_circ_g.3 AT1G04430_circ_g.4 AT1G04440_circ_g.1 AT1G04440_circ_g.2 AT1G04440_circ_g.3 AT1G04440_circ_g.4 AT1G04440_circ_g.5 1_circ_ag.6 AT1G04440_circ_g.7 AT1G04440_circ_g.8 AT1G04440_circ_g.9 AT1G04440_circ_g.10 AT1G04440_circ_g.11 AT1G04440_circ_g.12 AT1G04510_circ_g.1 AT1G04510_circ_g.2 AT1G04510_circ_g.3 AT1G04510_circ_g.4 AT1G04510_circ_g.5 AT1G04510_circ_g.6 AT1G04510_circ_g.7 AT1G04510_circ_g.8 AT1G04510_circ_g.9 AT1G04510_circ_g.10 AT1G04530_circ_g.1 AT1G04530_circ_g.2 AT1G04550_circ_g.1 AT1G04590_circ_g.1 AT1G04590_circ_g.2 AT1G04600_circ_g.1
Support reads 2
Tissues seedlings
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G04210.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATGTGGGAATACCTCCTCCTAATATCTGTGTCGGCACACCACGTTGGATGTCCCCTGAAGTC
TTCAGAGCAATGCACGAACAAAACTTTTATGGACTTatgcgcacattagaggtttctggagctt
ccttagatgacattaggacttttgagtatacatgcttaggagaagtacggattttaggagcttt
gaaacatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGCGCACATTAGAGGTTTCTGGAGCTTCCTTAGATGACATTAGGACTTTTGAGTATACATGCT
TAGGAGAAGTACGGATTTTAGGAGCTTTGAAACATGACTGCATTGTGGAGTTATATGGACATGA
GATATCGTCCAAGTGGATAACCTCAGAAAATGGAAATGAACATCGAGTATTGCAATCTTCTATT
CTGATGGAACACATCAAAGGAGGATCTCTAAAGGTAAAATTCTTTCTTTACTCAATCTATATCG
AAAGTCTTTGTAACATCAATCAGAACCTTCTAAATGGTTTTATTGTACTCAGGGTCACATTGAG
AAGCTCTCCGAAGCTGGTAAGCACCATGTCCCCATGGATCTAGCTTTGTCTATTGCAAGAGATA
TCTCAGGGGCTTTGATGGAGCTGCACTCAAAGGATATAATTCACCGTGACATTAAAAGCGAAAA
CGTTTTGATCGATCTGGACAATCAAAGTGCAAATGGAGAACCCATTGTGAAGCTTTGTGATTTT
GATAGAGCTGTTCCGCTTAGGTCTCACTTGCACGGGTGCTGTATTGCCCATGTGGGAATACCTC
CTCCTAATATCTGTGTCGGCACACCACGTTGGATGTCCCCTGAAGTCTTCAGAGCAATGCACGA
ACAAAACTTTTATGGACTT
Conservation Information
Conserved circRNAs NA
PMCS 0.197087784
Functional Information
Coding potential Y
Potential coding position 1118223-1118878(+)
Potential amino acid sequence MRTLEVSGASLDDIRTFEYTCLGEVRILGALKHDCIVELYGHEISSKWITSENGNEHRVLQSSI
LMEHIKGGSLKGHIEKLSEAGKHHVPMDLALSIARDISGALMELHSKDIIHRDIKSENVLIDLD
NQSANGEPIVKLCDFDRAVPLRSHLHGCCIAHVGIPPPNICVGTPRWMSPEVFRAMHEQNFYGL
MRTLEVSGASLDDIRTFEYTCLGEVRILGALKHDCIVELYGHEISSKWITSENGNEHRVLQSSI
LMEHIKGGSLKGHIEKLSEAGKHHVPMDLALSIARDISGALMELHSKDIIHRDIKSENVLIDLD
NQSANGEPIVKLCDFDRAVPLRSHLHGCCIAHVGIPPPNICVGTPRWMSPEVFRAMHEQNFYGL
MRTLEVSGASLDDIRTFEYTCLGEVRILGALKHDCIVELYGHEISSKWITSENGNEHRVLQSSI
LMEHIKGGSLKGHIEKLSEAGKHHVPMDLALSIARDISGALMELHSKDIIHRDIKSENVLIDLD
NQSANGEPIVKLCDFDRAVPLRSHLHGCCIAHVGIPPPNICVGTPRWMSPEVFRAMHEQNFYGL
MRTLEVSGASLDDIRTFEYTCLGEVRILGALKHDCIVELYGHEISSKWITSENGNEHRVLQSSI
LMEHIKGGSLKGHIEKLSEAGKHHVPMDLALSIARDISGALMELHSKDIIHRDIKSENVLIDLD
NQSANGEPIVKLCDFDRAVPLRSHLHGCCIAHVGIPPPNICVGTPRWMSPEVFRAMHEQNFYGL
(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Pan et al., 2017