Detail information of AT1G04160_circ_g.8


General Information
CircRNA Name AT1G04160_circ_g.8
ID in PlantcircBase ath_circ_000570
Alias NA
Organism Arabidpsis thaliana
Position chr1: 1090406-1092131  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT1G04160
Parent gene annotation Myosin-8
Parent gene strand +
Alternative splicing 1_circ_ag.6 1_circ_ag.7 AT1G04160_circ_g.9 AT1G04160_circ_g.10 AT1G04160_circ_g.11 AT1G04160_circ_g.12 AT1G04160_circ_g.13 AT1G04170_circ_g.1 AT1G04170_circ_g.2 AT1G04170_circ_g.3 AT1G04170_circ_g.4 AT1G04170_circ_g.5 AT1G04170_circ_g.6 AT1G04190_circ_g.1 AT1G04190_circ_g.2 AT1G04190_circ_g.3 AT1G04200_circ_g.1 AT1G04200_circ_g.2 AT1G04200_circ_g.3 AT1G04200_circ_g.4 AT1G04200_circ_g.5 AT1G04210_circ_g.1 AT1G04210_circ_g.2 AT1G04210_circ_g.3 AT1G04210_circ_g.4 AT1G04210_circ_g.5 AT1G04220_circ_g.1 AT1G04230_circ_g.1 AT1G04230_circ_g.2 AT1G04230_circ_g.3 AT1G04230_circ_g.4 AT1G04230_circ_g.5 AT1G04230_circ_g.6 AT1G04250_circ_g.1 AT1G04270_circ_g.1 AT1G04280_circ_g.1 AT1G04280_circ_g.2 AT1G04300_circ_g.1 AT1G04300_circ_g.2 AT1G04300_circ_g.3 AT1G04300_circ_g.4 AT1G04300_circ_g.5 AT1G04300_circ_g.6 AT1G04300_circ_g.7 AT1G04300_circ_g.8 AT1G04300_circ_g.9 AT1G04300_circ_g.10 AT1G04310_circ_g.1 AT1G04340_circ_g.1 AT1G04400_circ_g.1 AT1G04400_circ_g.2 AT1G04400_circ_g.3 AT1G04400_circ_g.4 AT1G04410_circ_g.1 AT1G04410_circ_g.2 AT1G04410_circ_g.3 AT1G04410_circ_g.4 AT1G04410_circ_g.5 AT1G04410_circ_g.6 AT1G04410_circ_g.7 AT1G04410_circ_g.8 AT1G04420_circ_g.1 AT1G04420_circ_g.2 AT1G04420_circ_g.3 AT1G04420_circ_g.4 AT1G04425_circ_g.1 AT1G04430_circ_g.1 AT1G04430_circ_g.2 AT1G04430_circ_g.3 AT1G04430_circ_g.4 AT1G04440_circ_g.1 AT1G04440_circ_g.2 AT1G04440_circ_g.3 AT1G04440_circ_g.4 AT1G04440_circ_g.5 1_circ_ag.6 AT1G04440_circ_g.7 AT1G04440_circ_g.8 AT1G04440_circ_g.9 AT1G04440_circ_g.10 AT1G04440_circ_g.11 AT1G04440_circ_g.12 AT1G04510_circ_g.1 AT1G04510_circ_g.2 AT1G04510_circ_g.3 AT1G04510_circ_g.4 AT1G04510_circ_g.5 AT1G04510_circ_g.6 AT1G04510_circ_g.7 AT1G04510_circ_g.8 AT1G04510_circ_g.9 AT1G04510_circ_g.10 AT1G04530_circ_g.1 AT1G04530_circ_g.2 AT1G04550_circ_g.1 AT1G04590_circ_g.1 AT1G04590_circ_g.2 AT1G04600_circ_g.1
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G04160.1:8
AT1G04160.2:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTTCTGCTACTATTTTAATTCAAGCGGGTATGCGTGGTATGGTTTCCCGAAAGGAATTGTGT
CTCAGAAGGCAGACTAAAGCTGCAACCATAATCCAGaaacccggaggtattattgctcttctag
atgaagcttggtgagtttgaaacccaatattagatgcttaatccatgctttgttctgcttataa
tttacttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAACCCGGAGGTATTATTGCTCTTCTAGATGAAGCTTGGTGAGTTTGAAACCCAATATTAGATG
CTTAATCCATGCTTTGTTCTGCTTATAATTTACTTTTCCAATATTTTTATATTTGTTTTAAGAG
AAATGTAGCTGACGTGATGATTTCGTTTTGCAGCATGTTTCCTAGATCAACACACGAGACATTT
GCTCAGAAACTATACCAGACATACAAAAACCACAAGCGCTTTACCAAGCCGAAATTGGCTCGTA
GCGACTTCACTATTTGTCATTATGCTGGTGATGTGAGCATCTTTTGCTTATCTGCTGCGTTCAT
TGGTTAAAATGATTTTGAAAAGATATACAAGAAAGTCAATAATTGGTTTGTAAATATCTCGTTT
AACAACCTTGAGTGTATTGTTCCAGGTCACGTATCAGACTGAACTTTTTCTAGACAAGAACAAG
GATTATGTTATTGCTGAGCATCAAGCGTTGTTAAATGCTTCTACATGTTCATTTGTTGCAAATT
TGTTCCCACCAGTATCTGACGATTCCAAACAATCAAAATTCTCCTCTATAGGTACCCGTTTCAA
GGTGAGTCTGATTTTGGTCTCCACTTTCATCTTAGCATGTTTTAATCTTTATTTCTTAATGTTA
CTGATTTCATATTTATGCTTTTTTGCAGCAACAATTGGTATCATTGCTTGAGATTCTCAATACA
ACGGAGCCACATTATATCAGATGTATAAAGCCTAATAATCTTCTGAAGCCTGGAATCTTTGAGA
ACCAAAACGTTCTACAGCAATTGCGTTGCGGGGTGCGAATGACATCTCTTTTCGGTTATATATC
AAGCTTCTCCTAAAAATTATTAAATCCCCAAGATTGATTGTATTTTGGGTGTTTTTCTGACCTC
AGGGAGTGATGGAGGCAATCCGGATTAGTTGTGCTGGTTATCCTACTAGGAAGCACTTTGACGA
GTTCTTGAACAGATTTGGTATCATTGCTCCACAAGTGTTGGACAAGAAGTAAGATGTCTCTTCC
TCATCGGATAGCCTTCAATGCGAGGTTATTTTCAATGACTTGTCTTGCTGACTCCTCTTTTCTT
TTTACTAGTTCTAATGAGCCAGCTGCCTGCAAGAAGCTTCTTGATAAGGCGGGACTTGAAGGAT
ATCAGGTAATTTCTTTAATTAGCAGAATATTGTTTGTCAGTTTCTTCAGTCTGCTTCTATGATG
AGTTACCTGAGATTGGAAACGTTTTCTTTTGTAGATTGGTAAATCAAAGGTTTTTCTTAGGGCT
GGACAAATGGCAGACTTGGATACTAGAAGAACTGAAATCTTGGGAAGATCGGCGAGCATTATCC
AAAGAAAAGTGCGATCATATCTTGCGCAGAAAACTTTTATCCAACTGCGTATTTCTGCTACACA
AATCCAAGCAGTTTGTAGAGGTATTTAGATTGTCATCTTCTTATTGTTTGTCTTGGTTTTTTAC
TTTACTTCTCAAACTAACTTGCAAACTTATGGGTCACTCTTTTTTCAGGTTATCTTGCTAGAAG
TATATACGAAGGCATGCGCAGGGAAGCTGCTGCTTTGAAAATCCAGAGAGACTTGCGTAAGTTT
CTGGCCAGGAAAGCTTACACTGAGCTATTTTCTGCTACTATTTTAATTCAAGCGGGTATGCGTG
GTATGGTTTCCCGAAAGGAATTGTGTCTCAGAAGGCAGACTAAAGCTGCAACCATAATCCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.192911056
Functional Information
Coding potential Y
Potential coding position 1090568-1092128(+)
Potential amino acid sequence MFPRSTHETFAQKLYQTYKNHKRFTKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVIAEHQA
LLNASTCSFVANLFPPVSDDSKQSKFSSIGTRFKQQLVSLLEILNTTEPHYIRCIKPNNLLKPG
IFENQNVLQQLRCGGVMEAIRISCAGYPTRKHFDEFLNRFGIIAPQVLDKNSNEPAACKKLLDK
AGLEGYQIGKSKVFLRAGQMADLDTRRTEILGRSASIIQRKVRSYLAQKTFIQLRISATQIQAV
CRGYLARSIYEGMRREAAALKIQRDLRKFLARKAYTELFSATILIQAGMRGMVSRKELCLRRQT
KAATIIQKPGGIIALLDEACMFPRSTHETFAQKLYQTYKNHKRFTKPKLARSDFTICHYAGDVT
YQTELFLDKNKDYVIAEHQALLNASTCSFVANLFPPVSDDSKQSKFSSIGTRFKQQLVSLLEIL
NTTEPHYIRCIKPNNLLKPGIFENQNVLQQLRCGGVMEAIRISCAGYPTRKHFDEFLNRFGIIA
PQVLDKNSNEPAACKKLLDKAGLEGYQIGKSKVFLRAGQMADLDTRRTEILGRSASIIQRKVRS
YLAQKTFIQLRISATQIQAVCRGYLARSIYEGMRREAAALKIQRDLRKFLARKAYTELFSATIL
IQAGMRGMVSRKELCLRRQTKAATIIQKPGGIIALLDEACMFPRSTHETFAQKLYQTYKNHKRF
TKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVIAEHQALLNASTCSFVANLFPPVSDDSKQS
KFSSIGTRFKQQLVSLLEILNTTEPHYIRCIKPNNLLKPGIFENQNVLQQLRCGGVMEAIRISC
AGYPTRKHFDEFLNRFGIIAPQVLDKNSNEPAACKKLLDKAGLEGYQIGKSKVFLRAGQMADLD
TRRTEILGRSASIIQRKVRSYLAQKTFIQLRISATQIQAVCRGYLARSIYEGMRREAAALKIQR
DLRKFLARKAYTELFSATILIQAGMRGMVSRKELCLRRQTKAATIIQKPGGIIALLDEACMFPR
STHETFAQKLYQTYKNHKRFTKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVIAEHQALLNA
STCSFVANLFPPVSDDSKQSKFSSIGTRFKQQLVSLLEILNTTEPHYIRCIKPNNLLKPGIFEN
QNVLQQLRCGGVMEAIRISCAGYPTRKHFDEFLNRFGIIAPQVLDKNSNEPAACKKLLDKAGLE
GYQIGKSKVFLRAGQMADLDTRRTEILGRSASIIQRKVRSYLAQKTFIQLRISATQIQAVCRGY
LARSIYEGMRREAAALKIQRDLRKFLARKAYTELFSATILIQAGMRGMVSRKELCLRRQTKAAT
IIQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017