Detail information of AT1G04400_circ_g.3


General Information
CircRNA Name AT1G04400_circ_g.3
ID in PlantcircBase ath_circ_000620
Alias At_ciR910, Ath_circ_FC5545
Organism Arabidpsis thaliana
Position chr1: 1186452-1188006  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method PcircRNA_finder, find_circ
Parent gene AT1G04400
Parent gene annotation Cryptochrome-2
Parent gene strand -
Alternative splicing 1_circ_ag.6 1_circ_ag.7 AT1G04160_circ_g.8 AT1G04160_circ_g.9 AT1G04160_circ_g.10 AT1G04160_circ_g.11 AT1G04160_circ_g.12 AT1G04160_circ_g.13 AT1G04170_circ_g.1 AT1G04170_circ_g.2 AT1G04170_circ_g.3 AT1G04170_circ_g.4 AT1G04170_circ_g.5 AT1G04170_circ_g.6 AT1G04190_circ_g.1 AT1G04190_circ_g.2 AT1G04190_circ_g.3 AT1G04200_circ_g.1 AT1G04200_circ_g.2 AT1G04200_circ_g.3 AT1G04200_circ_g.4 AT1G04200_circ_g.5 AT1G04210_circ_g.1 AT1G04210_circ_g.2 AT1G04210_circ_g.3 AT1G04210_circ_g.4 AT1G04210_circ_g.5 AT1G04220_circ_g.1 AT1G04230_circ_g.1 AT1G04230_circ_g.2 AT1G04230_circ_g.3 AT1G04230_circ_g.4 AT1G04230_circ_g.5 AT1G04230_circ_g.6 AT1G04250_circ_g.1 AT1G04270_circ_g.1 AT1G04280_circ_g.1 AT1G04280_circ_g.2 AT1G04300_circ_g.1 AT1G04300_circ_g.2 AT1G04300_circ_g.3 AT1G04300_circ_g.4 AT1G04300_circ_g.5 AT1G04300_circ_g.6 AT1G04300_circ_g.7 AT1G04300_circ_g.8 AT1G04300_circ_g.9 AT1G04300_circ_g.10 AT1G04310_circ_g.1 AT1G04340_circ_g.1 AT1G04400_circ_g.1 AT1G04400_circ_g.2 AT1G04400_circ_g.4 AT1G04410_circ_g.1 AT1G04410_circ_g.2 AT1G04410_circ_g.3 AT1G04410_circ_g.4 AT1G04410_circ_g.5 AT1G04410_circ_g.6 AT1G04410_circ_g.7 AT1G04410_circ_g.8 AT1G04420_circ_g.1 AT1G04420_circ_g.2 AT1G04420_circ_g.3 AT1G04420_circ_g.4 AT1G04425_circ_g.1 AT1G04430_circ_g.1 AT1G04430_circ_g.2 AT1G04430_circ_g.3 AT1G04430_circ_g.4 AT1G04440_circ_g.1 AT1G04440_circ_g.2 AT1G04440_circ_g.3 AT1G04440_circ_g.4 AT1G04440_circ_g.5 1_circ_ag.6 AT1G04440_circ_g.7 AT1G04440_circ_g.8 AT1G04440_circ_g.9 AT1G04440_circ_g.10 AT1G04440_circ_g.11 AT1G04440_circ_g.12 AT1G04510_circ_g.1 AT1G04510_circ_g.2 AT1G04510_circ_g.3 AT1G04510_circ_g.4 AT1G04510_circ_g.5 AT1G04510_circ_g.6 AT1G04510_circ_g.7 AT1G04510_circ_g.8 AT1G04510_circ_g.9 AT1G04510_circ_g.10 AT1G04530_circ_g.1 AT1G04530_circ_g.2 AT1G04550_circ_g.1 AT1G04590_circ_g.1 AT1G04590_circ_g.2 AT1G04600_circ_g.1
Support reads 7/32
Tissues leaf/whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G04400.1:3
AT1G04400.2:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATGATCACAGATGAATCAAAGATCAAATCAGCTAAAATTCCACACTCTAACCAAGTTGTTCC
ATGATTTCAGACCTCAACCTCCTCCAGAGAATAGTTcgcgggattgtccaagcgatcaagctcg
tggccatcggggatactcccagagatatactgccagccaaggatgtcacattccaaatcagcat
ccaaaagt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1356
Transcript exons: 1186452-1187164,1187260-1187484,1187589-1188006
CGCGGGATTGTCCAAGCGATCAAGCTCGTGGCCATCGGGGATACTCCCAGAGATATACTGCCAG
CCAAGGATGTCACATTCCAAATCAGCATCCAAAAGTGTATCCCAGAAATACTTCATTCCCCATT
TCCATGGAAGGAGAAGAAACTTCACAGCAAAGCTTGAAACAATCACTCTTATTCTGTTATGCAT
CCATCCGGTAGCCCAAAGCTCTCTCATTCCGGCATCCACCAACGGATAACCGGTCCTGCCTTGT
CTCCAGGCCTTGAACTTATCAACATCAGCATCCCAAGGGAAAAACCGAAGATGACTCAACAACG
ATTGCTCGTGAGTAAACGGGAAGTTGAAACATATATACCGAGAATACTCTCTTAAACCGATTCC
CCTAAGAAAAAGATCTGCACTTTCTTCTCCTTCACTGTTCTTATCTCTTGCCCATATAATTTGT
TTCATCCGGGCACACTGGAAAACGTGTCTGACGCTTATTTCCCCGAAATGGAGATACGGAGAAA
GTAGTGAAGTAGAATTCCCAACAACTTTCTTGCTGTTCTTTGCATAATCTATCAACTGCTTCTC
GATGAACTCATTTAGTAACTTATCAGCATTGCTCCATCCTGGAGACCAAGCTCTAGTTAACAAC
GCATTGCTCGGTTTCTCGGCCTCATTCTCCAGCCCTAGTTCTTCAATCGAACACGCCCAAATCG
CTTCAGCCGCTGCAGTTATTGGCATCAACCGCCAAGGAGGAGGAAGCATAACGGATTCAATCGA
CATATCTAAGCATTTCTTCCAGTAAGAATTGAAACTCGTAAAAGGTTTGCCCTTTTCGCAGTAT
ATCTCCCACGGTTCATACAATAGATCTCCATTGTAGCTTTGCACAGAGATCCCACGTTCCACCA
GCTTCTCCTTTACGGTATGGTCCCGAACTAACGAAACAGGATCATAGAGGTGGTTAAAGACGAC
TTTTGTAGCACCGGTAACGCGGATACAATCCAAGATCGCTGAAATCGTGTTGTGGGTTTTGATT
AAAGTGAGGTCAGATCCAAGAGCCTTCAAGGATTGAGATAAGTGAGCAAGTGATTGTTTCATCC
ACCATCTTGAAGCTCTTCCAGGATAAAACTGTCCTTCTTCTTCAGGACACCAAATGAAGACAGG
AAAAACAGATCCTTCGTGAGCAGCTGCTGCTAATGCAGGATTATCCTCAATCCTTAGGTCTCTT
CTAAACCAAACTATAGTCTTTTTGTCCATCTTCATAGTTATTATGATCACAGATGAATCAAAGA
TCAAATCAGCTAAAATTCCACACTCTAACCAAGTTGTTCCATGATTTCAGACCTCAACCTCCTC
CAGAGAATAGTT

Genomic sequence CGCGGGATTGTCCAAGCGATCAAGCTCGTGGCCATCGGGGATACTCCCAGAGATATACTGCCAG
CCAAGGATGTCACATTCCAAATCAGCATCCAAAAGTGTATCCCAGAAATACTTCATTCCCCATT
TCCATGGAAGGAGAAGAAACTTCACAGCAAAGCTTGAAACAATCACTCTTATTCTGTTATGCAT
CCATCCGGTAGCCCAAAGCTCTCTCATTCCGGCATCCACCAACGGATAACCGGTCCTGCCTTGT
CTCCAGGCCTTGAACTTATCAACATCAGCATCCCAAGGGAAAAACCGAAGATGACTCAACAACG
ATTGCTCGTGAGTAAACGGGAAGTTGAAACATATATACCGAGAATACTCTCTTAAACCGATTCC
CCTAAGAAAAAGATCTGCACTTTCTTCTCCTTCACTGTTCTTATCTCTTGCCCATATAATTTGT
TTCATCCGGGCACACTGGAAAACGTGTCTGACGCTTATTTCCCCGAAATGGAGATACGGAGAAA
GTAGTGAAGTAGAATTCCCAACAACTTTCTTGCTGTTCTTTGCATAATCTATCAACTGCTTCTC
GATGAACTCATTTAGTAACTTATCAGCATTGCTCCATCCTGGAGACCAAGCTCTAGTTAACAAC
GCATTGCTCGGTTTCTCGGCCTCATTCTCCAGCCCTAGTTCTTCAATCGAACACGCCCAAATCG
CTTCAGCCGCTAACAAAGAAAAAGCCATAAACTTTTACTACCGCTTATGTCCTGAAGAAATCAA
AAACGTTTTAGCTTTTAAGTAATACTCTTTAAGGTTTTACCTGCAGTTATTGGCATCAACCGCC
AAGGAGGAGGAAGCATAACGGATTCAATCGACATATCTAAGCATTTCTTCCAGTAAGAATTGAA
ACTCGTAAAAGGTTTGCCCTTTTCGCAGTATATCTCCCACGGTTCATACAATAGATCTCCATTG
TAGCTTTGCACAGAGATCCCACGTTCCACCAGCTTCTCCTTTACGGTATGGTCCCGAACTAACG
AAACAGGATCTACAACAAAGAAAAACGTGATCGCATCAACCTCAGTTGCACTTAGACTACACTA
ACTTAATAAGAATATATATCCTTTGAATAAGAGATGAAAGAGTATATACCATAGAGGTGGTTAA
AGACGACTTTTGTAGCACCGGTAACGCGGATACAATCCAAGATCGCTGAAATCGTGTTGTGGGT
TTTGATTAAAGTGAGGTCAGATCCAAGAGCCTTCAAGGATTGAGATAAGTGAGCAAGTGATTGT
TTCATCCACCATCTTGAAGCTCTTCCAGGATAAAACTGTCCTTCTTCTTCAGGACACCAAATGA
AGACAGGAAAAACAGATCCTTCGTGAGCAGCTGCTGCTAATGCAGGATTATCCTCAATCCTTAG
GTCTCTTCTAAACCAAACTATAGTCTTTTTGTCCATCTTCATAGTTATTATGATCACAGATGAA
TCAAAGATCAAATCAGCTAAAATTCCACACTCTAACCAAGTTGTTCCATGATTTCAGACCTCAA
CCTCCTCCAGAGAATAGTT
Conservation Information
Conserved circRNAs NA
PMCS 0.381314122
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA