Detail information of BGIOSGA014534_circ_igg.1


General Information
CircRNA Name BGIOSGA014534_circ_igg.1
ID in PlantcircBase osi_circ_014672
Alias Chr04:29026048_29027356(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 27266587-27267895  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA014534_circ_g.5 BGIOSGA014534_circ_g.2 BGIOSGA014534_circ_g.3 BGIOSGA014534_circ_igg.4 BGIOSGA014534_circ_g.5 BGIOSGA014534_circ_g.6 BGIOSGA014534_circ_g.7
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTCGCTGTGAAGAACCATGGCCAGGAGCTCCTGGAGCCTCTCCAGAACTCTCACCGGTGTTGC
CAGACCCAGTTCTTTTCTTCTTCACCATGATGGGCAccttgtggtaggcaattcacgtaacaca
atgtcaaggacttgaagggcttcttgaggagcatctgcttgccttccagctagaaacatagcca
aatggtga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGTGGTAGGCAATTCACGTAACACAATGTCAAGGACTTGAAGGGCTTCTTGAGGAGCATCT
GCTTGCCTTCCAGCTAGAAACATAGCCAAATGGTGAAGATCAGCACGGGCAGCAAACTTGATCA
CCACCCTAAATAGTCTCTCACGCCTTAAAATAGAAGGAATGTCAGTAACAAGTTTTTAATAGAT
ATTTAACTAAAGATAAAATAGCAATAGCATACCTTTGGGTGCCTTGGCCACCACCAAGACTATC
TTCCTCATCTTGAAGAGTAATTTCAAATGTCCTAGAAGCAAAAGGCAATGGTCCAGCTGTGTAA
AGACTCTTCCTTCCATCATAGGCAGGTAGACGCCCGCCCAAATGGGAATATCTATACAGCGTTA
CTAACTCAAACATAACAGCACGATTCACGCCACGTGAAGTAACCTCAGGAGTAATAGATACCTG
AAGGAACAAGATAGGTGATCAAAATCACAAAATGAAAGCTACAGCAAGGAAATAGGACTTACAA
AAGCCTTACGTCGTATTGGTGAAGGTCTTTATCAGGAAGTTCAGCAAAGAAATGGTTCGCCTTC
ACAATGCACCTGTCCCCATATGTACCCTTGCCAGGGCGCAACGGGAATCTAACTGATTTGCTTG
ACGGTGGTGCTATTTGAATGGCTTGGCTGGTCGAACTTTGATCACGGGTGGCAAGTTGCTGAAA
CTGTTGTTGGACTTGTCCACTGCTCACCTCCGCCGCAGGCTGAGAGGATGAGCCAGCTCCCGAT
GGGGTTGGTGAAACCATCGGGGCTTGGTATTGGACATGTGGGGCTTGGTGCAGCTCGGGAACTG
TTCTTGATGAACCTGAAGGAACACTACGTCCGCCACTCCCCCTAGGTCCGCCATAGTATGGCTG
TGGCATTCCACCTCTGGGGCGTGGACCACCACGTCCTTGATAGTCACGCGGTTGATACTCGGGA
GGCCCACCACCTGGGTGATGTGAACCTGATCCTCCACGGCCCTGATAGTCAGGAGGCCCACCAC
CTGGATGATGTGAACCTGGCCCTCCACGACCCTGATACTCAGGAGGCCCTCCGCCTGGATGGTG
TGAACCTTGCCCTCCACGGCCCTGATAATGTCCACCACGGCCCTGATATTGCCCACCACCACGG
CCACCCTGTTGAGGCACCCAACCACGTCCTCCCCCATGCTGTTGAGGACCTCTCTCAGCTCGCT
GTGAAGAACCATGGCCAGGAGCTCCTGGAGCCTCTCCAGAACTCTCACCGGTGTTGCCAGACCC
AGTTCTTTTCTTCTTCACCATGATGGGCA
Conservation Information
Conserved circRNAs osa_circ_024920
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021