Detail information of BGIOSGA015140_circ_g.11


General Information
CircRNA Name BGIOSGA015140_circ_g.11
ID in PlantcircBase osi_circ_014334
Alias Chr04:20740151_20740423(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 18029271-18029543  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA015140
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015140_circ_g.1 BGIOSGA015140_circ_g.2 BGIOSGA015140_circ_g.3 BGIOSGA015140_circ_g.4 BGIOSGA015140_circ_g.5 BGIOSGA015140_circ_g.6 BGIOSGA015140_circ_g.7 BGIOSGA015140_circ_g.8 BGIOSGA015140_circ_g.9 BGIOSGA015140_circ_g.10 BGIOSGA015140_circ_g.12
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered BGIOSGA015140-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTCAAGTTTGTCTTCAGCCACAACCTTTATGCTTGCTTCTGCCACTGATGGAATCTCTTCCTC
CTCCTCAAAAGGTTTTACTTTATTATCATCAGGTATccggtagtcaagatggttccgaaatcct
tccagcattgggtcaatttggtatatcttctgcccatctcctggtggtgggataactcgtggtt
tatcctcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCGGTAGTCAAGATGGTTCCGAAATCCTTCCAGCATTGGGTCAATTTGGTATATCTTCTGCCCA
TCTCCTGGTGGTGGGATAACTCGTGGTTTATCCTCCACAGTTGGTTCATCAGCATCTTTGATCA
CACCCTCAGTCACATTTTCCTCAATGTCTTGAATCACTTCTGAAGATTCAAGTTTGTCTTCAGC
CACAACCTTTATGCTTGCTTCTGCCACTGATGGAATCTCTTCCTCCTCCTCAAAAGGTTTTACT
TTATTATCATCAGGTAT
Conservation Information
Conserved circRNAs osa_circ_023753
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021