Detail information of BGIOSGA015140_circ_g.5


General Information
CircRNA Name BGIOSGA015140_circ_g.5
ID in PlantcircBase osi_circ_014332
Alias Chr04:20737552_20740423(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 18026672-18029543  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA015140
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015140_circ_g.1 BGIOSGA015140_circ_g.2 BGIOSGA015140_circ_g.3 BGIOSGA015140_circ_g.4 BGIOSGA015140_circ_g.6 BGIOSGA015140_circ_g.7 BGIOSGA015140_circ_g.8 BGIOSGA015140_circ_g.9 BGIOSGA015140_circ_g.10 BGIOSGA015140_circ_g.11 BGIOSGA015140_circ_g.12
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA015140-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTCAAGTTTGTCTTCAGCCACAACCTTTATGCTTGCTTCTGCCACTGATGGAATCTCTTCCTC
CTCCTCAAAAGGTTTTACTTTATTATCATCAGGTATcccaaagcttgcgtaataagagtgctcc
tggattgccattatctgtacagcattgtacccaagctttttaattcttggtagcacctcatccc
taaaatta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCAAAGCTTGCGTAATAAGAGTGCTCCTGGATTGCCATTATCTGTACAGCATTGTACCCAAGC
TTTTTAATTCTTGGTAGCACCTCATCCCTAAAATTAGCATATGTGTTTATCTTCGGTTCCTGTA
CAACAGACAATACCGAGTAATTATATTATGCATTATTGGGTACTCACACTACAGAACACAAACT
TCACAGCTTGTTAGTACAAATCATCTAGGTAAGACAATATGGCATTTCTTGCCTCCTAAATGCA
AAATCTTCAACTGGTAACACAGCCACATTATTTAACAGGCCATTACAATTGTTAATCATAATAG
ATATGTTCTGGCAAACAATGTTTAGCTTTACTTTCAAATGCAACAAAAATCATACTTCCTCCGT
TTCACAATATAAGACTTTCTAGCATTGTCCACATTCATATAGATGTTGATGAATCTAGACACAT
ATACATCTATATGAATGTGGGCAATGCTAGAAAGTCTTACATTGTGAAATGGAGGGAGTACAAC
AAAAAAAGGAAGATCTAATGAGAACAAAGTTTCACATATGTCAGTCTGAAAACATTTTAAAATC
TGTGTAGTTTATTACATGGAAAAAACGTGTCTGCTAGATATTAAATTGGAGAAGGGAAGTACTC
TCAGATATGTTGTTAAACCTGCTACATAAATAGAAAGAACTAGATTGCATTCTACAAAGCGAAA
AAGGTTTCAAGACAAAAAAGAAAAGTCAAAATATTAATAACTTATTGGCATACCGGGCTACTCA
TTCCAATATGTGATTCATATATCCGCAGCGAATTTGGTCGTTTAGGTTGAGGATGTTGGAATAC
ATATTTTTCCTGCAGTTGCGTATAAACAACATTAGGAGATGGAAAATAAAGGTTAAAATGGAAT
ATCCTGATCAACAAAGAAAAAAAAGTAGTATTACACAGTTCTATAAGGTTTTAGTGACACGAGC
ATAGATTTTTTTAAAAAAAATGCAATGGAAAAATATTTCGTTTAAAGACTGTAAGGTAGAAACA
TACTTCTTCAGGTGGATCATAATATATACCGTTGTACGGTATTTCACCTGGAGCCTGCACAGCA
AACTTAATCCAGGCAGGAATTGAATCCTTTACGCCAGATGGTGTATCCATCCGAATCTGGAAAT
TAAGAAGGTGAAAGAAGATCTCTCAGTAAGCTCATTTTGAAAATGATTAAACCCTCAACTAAGT
AAATAGCCAATCAGAAAACTTACCTTTACACGTGAGCCATGAGGAATAGCAGGGGATCCATCAG
CATTGTTAGGCAGGGAAATCTCCCAAACACCATACTCATTCTGAAAGTGATCATGCCATATATC
AACACTAATAAGAGAAAAAACGTTGCTGGCACATGTAAATAGGCTCGTATGCTGCGAAATACAC
CCTTCTCATGTCATATAATAAACCAGTGTGGATGGAAGTGTACAAAATTCAAGGCAATGTTTGG
AAAATGGGTTTGGGATATGATTTCCCACCCCCAAAGGGTAAGTTTTGATCTTAGCCATCCATTC
ATTTCACCCATTTCATCCTATCCCTCCATTCATTTCCATTTCCCAATCCCACCTCTCCTAACCC
ATTTTCCAAACACACCCCAAAAGGCTATATTAACCATTAGGATGCAAAATTGCATGCATGTGTT
TACTGTTTACCCTAAACATGAATTCTGCTATTTTGGACTCAAAGAAGATGATAGTTAGTAAAGT
AAGGAACAGTGCTCTGTTTTCACTGACTTTGAGACAATATAGAGTAGCAGCATTTTAGAATGAC
ACACGTGAGGTTCAACTTTAAGGAATATAAACAGAAATAATGAACCCAGATAATTGAAAATATA
TTAATGATACAATACAAAGATGGAAAATAAAAAGGTTGAAGACGTACTCTGGTCATAGTATCTG
CATTTGGGTTCCAATTGTTGAAGTCACCTACTAATGCTGCAGACTGCAATAGGATGAAAATGTC
ATTTTTAATTCTTAATGTGATGACTGTTTGAAAAGAAGTTCATCAATATATCATTTGTGCTACT
GGTATAATTCCAGTACACTGGATAGGGAGTAGTGACCACTGCCAAATCACGTACCTGTGCTCCA
GGTGCCCATTCTCGGTAGGTAATGCCTTCAGCGCTGGAAAGGACGGAATAATGATATTGAGTTT
GATCATTTGATATCCAAGTAGAATATTGTAGGAATTTCTGTAGTAATGCGACTTTAATTTTACC
TGCGGGTGAATCCAAGCTTTTCGTAACCACGAGAAAATGCATCCAAGCCACCTTCATGTTGGTC
AATAGCTGCACGCATTCTCTTGTATTCACTGTATCTGTTCATACCACCACGCATACCAAAAAAG
ATATACTGAAGTTAACAGAGTAGGTTTCCCAACAAAAGCGCCAGATATCAGAAATTAATTTGCT
GAGTTGACAGAGAAGTGAGGGGATTAAACTATGCAGACTACTTGCCACATCCTTTTTGGTATCT
CTAGTGATCAGTGCCAATGATTTGTATTGCATTTGTGAGATATCACCTCTATTTTCAAATATTA
TACCAACCTTAATCAAAATGAAAAAAAGTAAATAACTAACCGGTAGTCAAGATGGTTCCGAAAT
CCTTCCAGCATTGGGTCAATTTGGTATATCTTCTGCCCATCTCCTGGTGGTGGGATAACTCGTG
GTTTATCCTCCACAGTTGGTTCATCAGCATCTTTGATCACACCCTCAGTCACATTTTCCTCAAT
GTCTTGAATCACTTCTGAAGATTCAAGTTTGTCTTCAGCCACAACCTTTATGCTTGCTTCTGCC
ACTGATGGAATCTCTTCCTCCTCCTCAAAAGGTTTTACTTTATTATCATCAGGTAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021