Detail information of BGIOSGA015140_circ_g.3


General Information
CircRNA Name BGIOSGA015140_circ_g.3
ID in PlantcircBase osi_circ_005448
Alias 4:18025450|18026524
Organism Oryza sativa ssp. indica
Position chr4: 18025450-18026524  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA015140
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015140_circ_g.1 BGIOSGA015140_circ_g.2 BGIOSGA015140_circ_g.4 BGIOSGA015140_circ_g.5 BGIOSGA015140_circ_g.6 BGIOSGA015140_circ_g.7 BGIOSGA015140_circ_g.8 BGIOSGA015140_circ_g.9 BGIOSGA015140_circ_g.10 BGIOSGA015140_circ_g.11 BGIOSGA015140_circ_g.12
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA015140-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACAAGCAAACCAAGCTCGTGAGCTTTATCAATCAGAGATTTCAAGTCTTCTGGGGTTCCGAAA
CGGCTACTTGGCGCAAAGAAGTTAGTAACATGATACatcttcaccaatggctacagcctcagga
taaagcccatgaattagatcgttcaccagcatcaagtaaactactgcatcaacatcagtagcaa
atccaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATCTTCACCAATGGCTACAGCCTCAGGATAAAGCCCATGAATTAGATCGTTCACCAGCATCAAG
TAAACTACTGCATCAACATCAGTAGCAAATCCAAAATATTCGCCATAGTTGCCAGTAAATGCCA
CCTATAACAAAACTTGACAATTTTAGAAAAAACAGTAGCAATTCCCATCAGGGGCAAACAATAC
TAGAATGAAATCCAAGTATCAGCAGCAGGAGTCATAATAAATCCATTCAAACATAGCAATGGTT
TCTGCAAAAGGACATTAAGGCACGCCCAAAACAGAAATGGCAGCACTCTGAAATGCAATTTACC
AGAAACACTTGATAACTTACCTGTAAACCATGATGAGTATACATCATGGAGGTCACCCCATCAA
ATCGAAACCCATCAAACTTGTATTCTTCAAGCCACCACCTTGCATTCGACAGTAAATATCTTAA
AACCTGCAAGAGGACATAATGTATGCATTGGTAAGGACAGAGTAACGGCAATAGTGAACCAATC
TATGGTGACAATAGTCAACTGTTACATACTTCCCAACTCCCATAGTTGAACAGGCGAGAATCCC
ACATCCAGTGATGACCCCGTGGTCCACCATGGAAGTAATGTGTATCAGTACCATCAAAACCATT
CAAACCATCCAGGGTATTGTTTGATGCATGACTGCAGGATACAACCAAAAAGAAAGAAAGAAAT
GGTAAAACTATCCAACTGAAAAGGATCAACTAAATCAAGTGGATGGAAAAGAAGTAAAAAAAAT
TATCTGGTCTATAAACACATGAATAAAGGGGTTAAGTCCAAGTACAATAGGTTCCGAACTCTTC
AGTCAAGATATTGACATGTATATACATGGAACTCTTTATGGAATAAACAGTGTCATGGGTGGAC
GCCAGTAATCTAAAATACTAGATTTACACAGACAAACAAATCAACATTTCACTAATTACCTGTG
AACAATATCCATAAGTACAAGCAAACCAAGCTCGTGAGCTTTATCAATCAGAGATTTCAAGTCT
TCTGGGGTTCCGAAACGGCTACTTGGCGCAAAGAAGTTAGTAACATGATAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 18026423-18026512(-)
18025453-18026512(-)
18026118-18025535(+)
Potential amino acid sequence MDIVHSHASNNTLDGLNGFDGTDTHYFHGGPRGHHWMWDSRLFNYGSWEVLRYLLSNARWWLEE
YKFDGFRFDGVTSMMYTHHGLQVAFTGNYGEYFGFATDVDAVVYLMLVNDLIHGLYPEAVAIGE
DVSCY*(-)
MYHVTNFFAPSSRFGTPEDLKSLIDKAHELGLLVLMDIVHSHASNNTLDGLNGFDGTDTHYFHG
GPRGHHWMWDSRLFNYGSWEVLRYLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNY
GEYFGFATDVDAVVYLMLVNDLIHGLYPEAVAIGEDVSCY*(-)
MTVNNIHKYKQTKLVSFINQRFQVFWGSETATWRKEVSNMIHLHQWLQPQDKAHELDRSPASSK
LLHQHQ*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021