Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA015140_circ_g.3 |
ID in PlantcircBase | osi_circ_005448 |
Alias | 4:18025450|18026524 |
Organism | Oryza sativa ssp. indica |
Position | chr4: 18025450-18026524 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA015140 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | BGIOSGA015140_circ_g.1 BGIOSGA015140_circ_g.2 BGIOSGA015140_circ_g.4 BGIOSGA015140_circ_g.5 BGIOSGA015140_circ_g.6 BGIOSGA015140_circ_g.7 BGIOSGA015140_circ_g.8 BGIOSGA015140_circ_g.9 BGIOSGA015140_circ_g.10 BGIOSGA015140_circ_g.11 BGIOSGA015140_circ_g.12 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA015140-TA:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
18026423-18026512(-) 18025453-18026512(-) 18026118-18025535(+) |
Potential amino acid sequence |
MDIVHSHASNNTLDGLNGFDGTDTHYFHGGPRGHHWMWDSRLFNYGSWEVLRYLLSNARWWLEE YKFDGFRFDGVTSMMYTHHGLQVAFTGNYGEYFGFATDVDAVVYLMLVNDLIHGLYPEAVAIGE DVSCY*(-) MYHVTNFFAPSSRFGTPEDLKSLIDKAHELGLLVLMDIVHSHASNNTLDGLNGFDGTDTHYFHG GPRGHHWMWDSRLFNYGSWEVLRYLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNY GEYFGFATDVDAVVYLMLVNDLIHGLYPEAVAIGEDVSCY*(-) MTVNNIHKYKQTKLVSFINQRFQVFWGSETATWRKEVSNMIHLHQWLQPQDKAHELDRSPASSK LLHQHQ*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |