Detail information of BGIOSGA015140_circ_g.8


General Information
CircRNA Name BGIOSGA015140_circ_g.8
ID in PlantcircBase osi_circ_000497
Alias NA
Organism Oryza sativa ssp. indica
Position chr4: 18026721-18027986  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method DCC
Parent gene BGIOSGA015140
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015140_circ_g.1 BGIOSGA015140_circ_g.2 BGIOSGA015140_circ_g.3 BGIOSGA015140_circ_g.4 BGIOSGA015140_circ_g.5 BGIOSGA015140_circ_g.6 BGIOSGA015140_circ_g.7 BGIOSGA015140_circ_g.9 BGIOSGA015140_circ_g.10 BGIOSGA015140_circ_g.11 BGIOSGA015140_circ_g.12
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   TC-CA
Number of exons covered BGIOSGA015140-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAATAGCCAATCAGAAAACTTACCTTTACACGTGAGCCATGAGGAATAGCAGGGGATCCATCA
GCATTGTTAGGCAGGGAAATCTCCCAAACACCATACgcattgtacccaagctttttaattcttg
gtagcacctcatccctaaaattagcatatgtgtttatcttcggttcctgtacaacagacaatac
cgagtaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCATTGTACCCAAGCTTTTTAATTCTTGGTAGCACCTCATCCCTAAAATTAGCATATGTGTTTA
TCTTCGGTTCCTGTACAACAGACAATACCGAGTAATTATATTATGCATTATTGGGTACTCACAC
TACAGAACACAAACTTCACAGCTTGTTAGTACAAATCATCTAGGTAAGACAATATGGCATTTCT
TGCCTCCTAAATGCAAAATCTTCAACTGGTAACACAGCCACATTATTTAACAGGCCATTACAAT
TGTTAATCATAATAGATATGTTCTGGCAAACAATGTTTAGCTTTACTTTCAAATGCAACAAAAA
TCATACTTCCTCCGTTTCACAATATAAGACTTTCTAGCATTGTCCACATTCATATAGATGTTGA
TGAATCTAGACACATATACATCTATATGAATGTGGGCAATGCTAGAAAGTCTTACATTGTGAAA
TGGAGGGAGTACAACAAAAAAAGGAAGATCTAATGAGAACAAAGTTTCACATATGTCAGTCTGA
AAACATTTTAAAATCTGTGTAGTTTATTACATGGAAAAAACGTGTCTGCTAGATATTAAATTGG
AGAAGGGAAGTACTCTCAGATATGTTGTTAAACCTGCTACATAAATAGAAAGAACTAGATTGCA
TTCTACAAAGCGAAAAAGGTTTCAAGACAAAAAAGAAAAGTCAAAATATTAATAACTTATTGGC
ATACCGGGCTACTCATTCCAATATGTGATTCATATATCCGCAGCGAATTTGGTCGTTTAGGTTG
AGGATGTTGGAATACATATTTTTCCTGCAGTTGCGTATAAACAACATTAGGAGATGGAAAATAA
AGGTTAAAATGGAATATCCTGATCAACAAAGAAAAAAAAGTAGTATTACACAGTTCTATAAGGT
TTTAGTGACACGAGCATAGATTTTTTTAAAAAAAATGCAATGGAAAAATATTTCGTTTAAAGAC
TGTAAGGTAGAAACATACTTCTTCAGGTGGATCATAATATATACCGTTGTACGGTATTTCACCT
GGAGCCTGCACAGCAAACTTAATCCAGGCAGGAATTGAATCCTTTACGCCAGATGGTGTATCCA
TCCGAATCTGGAAATTAAGAAGGTGAAAGAAGATCTCTCAGTAAGCTCATTTTGAAAATGATTA
AACCCTCAACTAAGTAAATAGCCAATCAGAAAACTTACCTTTACACGTGAGCCATGAGGAATAG
CAGGGGATCCATCAGCATTGTTAGGCAGGGAAATCTCCCAAACACCATAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019